Sodium in PDB 3o8q: 1.45 Angstrom Resolution Crystal Structure of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae

All present enzymatic activity of 1.45 Angstrom Resolution Crystal Structure of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae:
1.1.1.25;

The structure of 1.45 Angstrom Resolution Crystal Structure of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae, PDB code: 3o8q was solved by G.Minasov, S.H.Light, L.Shuvalova, L.Papazisi, W.F.Anderson, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.32 / 1.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.871, 63.146, 136.842, 90.00, 90.00, 90.00
R / Rfree (%)	15.2 / 19.5

The binding sites of Sodium atom in the 1.45 Angstrom Resolution Crystal Structure of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae (pdb code 3o8q). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the 1.45 Angstrom Resolution Crystal Structure of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae, PDB code: 3o8q:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the 1.45 Angstrom Resolution Crystal Structure of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.45 Angstrom Resolution Crystal Structure of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na279 b:25.0 occ:1.00 OE1 A:GLN32 2.2 22.2 0.7 O A:HOH505 2.5 33.0 1.0 O A:HOH504 2.6 17.7 0.5 O A:HOH501 2.6 20.9 1.0 O A:HOH503 2.6 29.8 1.0 O A:HOH502 2.7 28.1 1.0 OE1 A:GLN32 2.9 17.3 0.3 O A:HOH528 3.2 16.9 0.5 CD A:GLN32 3.4 19.9 0.7 O A:HOH495 3.7 34.4 1.0 CD A:GLN32 3.8 17.3 0.3 NE2 A:GLN32 4.0 21.8 0.7 O A:THR31 4.2 13.6 1.0 C A:THR31 4.4 13.1 1.0 NE2 A:GLN32 4.4 17.5 0.3 CA A:THR31 4.5 13.1 1.0 CG A:GLN32 4.6 18.4 0.7 O A:HOH528 4.6 17.7 0.5 CG A:GLN32 4.6 15.8 0.3 O A:GLN30 4.6 12.4 1.0 CB A:GLN32 4.7 14.8 0.3 CB A:GLN32 4.8 16.4 0.7 N A:GLN32 5.0 14.3 0.7

Sodium binding site 2 out of 2 in the 1.45 Angstrom Resolution Crystal Structure of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 1.45 Angstrom Resolution Crystal Structure of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ B:Na2 b:31.4 occ:1.00 O B:ALA76 2.3 17.7 1.0 O B:HOH516 2.4 45.0 1.0 O B:HOH399 2.4 28.2 1.0 O B:HOH464 2.5 38.1 1.0 O B:ARG74 2.6 20.4 1.0 C B:ALA76 3.4 17.3 1.0 C B:ARG74 3.6 18.2 1.0 O B:HOH319 3.8 43.8 1.0 C B:PHE75 4.0 17.1 1.0 O B:HOH434 4.1 41.4 1.0 O B:PHE75 4.1 18.7 1.0 N B:ALA76 4.2 16.6 1.0 O B:HOH408 4.2 44.0 1.0 O B:TYR73 4.2 18.3 1.0 CA B:ARG74 4.3 18.8 1.0 N B:ASP77 4.3 17.2 1.0 CA B:ALA76 4.4 17.0 1.0 CA B:ASP77 4.4 18.2 1.0 N B:PHE75 4.5 17.6 1.0 O B:ASP77 4.6 20.2 1.0 C B:ASP77 4.7 18.0 1.0 CA B:PHE75 4.7 17.9 1.0 O B:HOH332 4.8 47.2 1.0

G.Minasov, S.H.Light, L.Shuvalova, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.45 Angstrom Resolution Crystal Structure of Shikimate 5-Dehydrogenase (Aroe) From Vibrio Cholerae. To Be Published.