Sodium in PDB 3o6p: Crystal Structure of Peptide Abc Transporter, Peptide-Binding Protein

The structure of Crystal Structure of Peptide Abc Transporter, Peptide-Binding Protein, PDB code: 3o6p was solved by C.Chang, L.Bigelow, J.Bearden, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.47 / 1.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.733, 53.653, 79.498, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / 20

The binding sites of Sodium atom in the Crystal Structure of Peptide Abc Transporter, Peptide-Binding Protein (pdb code 3o6p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Peptide Abc Transporter, Peptide-Binding Protein, PDB code: 3o6p:

Sodium binding site 1 out of 1 in the Crystal Structure of Peptide Abc Transporter, Peptide-Binding Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Peptide Abc Transporter, Peptide-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:20.9 occ:1.00 O A:GLN420 2.3 15.3 0.5 O A:GLN420 2.3 15.0 0.5 O A:HOH78 2.4 20.7 1.0 O A:LEU423 2.5 16.4 1.0 O A:HOH228 2.5 31.1 1.0 O A:HOH21 2.6 25.5 1.0 O A:VAL426 2.7 17.4 1.0 C A:GLN420 3.4 15.1 0.5 C A:GLN420 3.4 15.0 0.5 C A:LEU423 3.5 16.3 1.0 N A:VAL426 3.7 15.7 1.0 C A:VAL426 3.7 15.9 1.0 CG A:GLN420 3.8 18.2 0.5 CA A:GLN420 3.9 15.2 0.5 N A:GLY425 3.9 19.2 1.0 CA A:GLN420 3.9 15.2 0.5 CA A:ASP424 4.0 19.5 1.0 CG A:GLN420 4.1 18.1 0.5 O A:HOH528 4.1 43.3 1.0 CA A:VAL426 4.1 15.8 1.0 N A:ASP424 4.2 17.7 1.0 O A:HOH73 4.3 31.1 1.0 C A:ASP424 4.3 19.4 1.0 CB A:GLN420 4.5 15.7 0.5 N A:ASP421 4.5 15.4 1.0 CB A:VAL426 4.5 15.6 1.0 N A:LEU423 4.5 15.4 1.0 CA A:LEU423 4.6 15.5 1.0 CB A:GLN420 4.6 15.6 0.5 C A:GLY425 4.7 17.9 1.0 OD1 A:ASP424 4.8 28.8 1.0 CA A:GLY425 4.8 18.4 1.0 O A:ILE419 4.8 14.0 1.0 CA A:ASP421 4.9 15.5 1.0 N A:LYS427 4.9 16.0 1.0 O A:ASP421 4.9 16.2 1.0 C A:ASP421 4.9 15.0 1.0 O A:HOH175 4.9 32.0 1.0

C.Chang, L.Bigelow, J.Bearden, A.Joachimiak. Crystal Structure of Peptide Abc Transporter, Peptide-Binding Protein To Be Published.