Sodium in PDB 3o65: Crystal Structure of A Josephin-Ubiquitin Complex: Evolutionary Restraints on Ataxin-3 Deubiquitinating Activity

Enzymatic activity of Crystal Structure of A Josephin-Ubiquitin Complex: Evolutionary Restraints on Ataxin-3 Deubiquitinating Activity

All present enzymatic activity of Crystal Structure of A Josephin-Ubiquitin Complex: Evolutionary Restraints on Ataxin-3 Deubiquitinating Activity:
3.1.2.15;

Protein crystallography data

The structure of Crystal Structure of A Josephin-Ubiquitin Complex: Evolutionary Restraints on Ataxin-3 Deubiquitinating Activity, PDB code: 3o65 was solved by S.D.Weeks, K.C.Grasty, L.Hernandez-Cuebas, P.J.Loll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.90 / 2.70
*Space group*	P 3 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	159.150, 159.150, 146.290, 90.00, 90.00, 120.00
*R / R_free (%)*	17.6 / 22.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Josephin-Ubiquitin Complex: Evolutionary Restraints on Ataxin-3 Deubiquitinating Activity (pdb code 3o65). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Josephin-Ubiquitin Complex: Evolutionary Restraints on Ataxin-3 Deubiquitinating Activity, PDB code: 3o65:

Sodium binding site 1 out of 1 in 3o65

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Sodium Binding Sites List in 3o65

Sodium binding site 1 out of 1 in the Crystal Structure of A Josephin-Ubiquitin Complex: Evolutionary Restraints on Ataxin-3 Deubiquitinating Activity

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Josephin-Ubiquitin Complex: Evolutionary Restraints on Ataxin-3 Deubiquitinating Activity within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na192 b:74.0 occ:1.00	O	A:LEU156	2.9	51.9	1.0
	O	A:TYR161	3.1	30.0	1.0
	O	A:GLN158	3.2	36.6	1.0
	C	A:LEU156	4.1	39.0	1.0
	C	A:TYR161	4.2	32.6	1.0
	C	A:GLN158	4.3	36.4	1.0
	O	A:GLN159	4.4	48.8	1.0
	OG	A:SER162	4.4	45.4	1.0
	O	A:HOH231	4.5	36.5	1.0
	CA	A:GLN159	4.5	37.9	1.0
	C	A:GLN159	4.7	38.2	1.0
	N	A:GLN159	4.8	37.6	1.0
	C	A:GLN157	4.9	42.1	1.0
	CA	A:LEU156	4.9	39.7	1.0
	O	A:GLN157	4.9	42.4	1.0

Reference:

S.D.Weeks, K.C.Grasty, L.Hernandez-Cuebas, P.J.Loll. Crystal Structure of A Josephin-Ubiquitin Complex: Evolutionary Restraints on Ataxin-3 Deubiquitinating Activity. J.Biol.Chem. V. 286 4555 2011.
ISSN: ISSN 0021-9258
PubMed: 21118805
DOI: 10.1074/JBC.M110.177360

Page generated: Mon Oct 7 11:56:41 2024

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