Sodium in the structure of High Resolution Crystal Structure of Histidine Triad Nucleotide- Binding Protein 1 (HINT1) C84A Mutant From Rabbit Complexed With Adenosine (pdb 3o1x)

The binding sites of Sodium atom in the structure of High Resolution Crystal Structure of Histidine Triad Nucleotide- Binding Protein 1 (HINT1) C84A Mutant From Rabbit Complexed With Adenosine (pdb code 3o1x). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3o1x structure was solved by R.M.DOLOT, M.OZGA, A.K.KRAKOWIAK, B.NAWROT, W.J.STEC, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 23.1-1.1 Space group P43212 a (A) 39.765 b (A) 39.765 c (A) 141.410 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 14.1 Rfree (%) 17.1 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3o1x Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3o1x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys83, A: Ala84, A: Ala86, A: Asp87, A: Hoh160, A: Hoh166, A: Hoh174, A: Hoh193, A: Hoh307, conact list: Atom Atom Distance (A) Na O A:Lys83 2.83 Na CB A:Lys83 3.87 Na C A:Lys83 3.59 Na CG A:Lys83 4.38 Na CA A:Lys83 3.68 Na N A:Ala84 4.77 Na C A:Ala86 4.64 Na CB A:Ala86 4.02 Na CA A:Ala86 4.86 Na N A:Asp87 3.98 Na N A:Asp87 4.02 Na CB A:Asp87 4.39 Na CB A:Asp87 4.17 Na OD2 A:Asp87 3.56 Na OD1 A:Asp87 2.70 Na CG A:Asp87 3.31 Na CA A:Asp87 4.53 Na CA A:Asp87 4.50 Na O A:Hoh160 4.06 Na O A:Hoh166 2.73 Na O A:Hoh174 4.48 Na O A:Hoh193 2.84 Na O A:Hoh307 3.02 interactive model: