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Sodium in PDB 3o1x: High Resolution Crystal Structure of Histidine Triad Nucleotide- Binding Protein 1 (HINT1) C84A Mutant From Rabbit Complexed with Adenosine

Protein crystallography data

The structure of High Resolution Crystal Structure of Histidine Triad Nucleotide- Binding Protein 1 (HINT1) C84A Mutant From Rabbit Complexed with Adenosine, PDB code: 3o1x was solved by R.M.Dolot, M.Ozga, A.K.Krakowiak, B.Nawrot, W.J.Stec, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.05 / 1.08
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 39.765, 39.765, 141.410, 90.00, 90.00, 90.00
R / Rfree (%) 14.1 / 17.1

Sodium Binding Sites:

The binding sites of Sodium atom in the High Resolution Crystal Structure of Histidine Triad Nucleotide- Binding Protein 1 (HINT1) C84A Mutant From Rabbit Complexed with Adenosine (pdb code 3o1x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the High Resolution Crystal Structure of Histidine Triad Nucleotide- Binding Protein 1 (HINT1) C84A Mutant From Rabbit Complexed with Adenosine, PDB code: 3o1x:

Sodium binding site 1 out of 1 in 3o1x

Go back to Sodium Binding Sites List in 3o1x
Sodium binding site 1 out of 1 in the High Resolution Crystal Structure of Histidine Triad Nucleotide- Binding Protein 1 (HINT1) C84A Mutant From Rabbit Complexed with Adenosine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Resolution Crystal Structure of Histidine Triad Nucleotide- Binding Protein 1 (HINT1) C84A Mutant From Rabbit Complexed with Adenosine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na127

b:35.2
occ:1.00
OD1 A:ASP87 2.7 39.1 0.8
O A:HOH166 2.7 34.4 1.0
O A:LYS83 2.8 21.1 1.0
O A:HOH193 2.8 46.4 1.0
O A:HOH307 3.0 49.6 1.0
CG A:ASP87 3.3 34.8 0.8
OD2 A:ASP87 3.6 38.0 0.8
C A:LYS83 3.6 18.3 1.0
CA A:LYS83 3.7 18.9 1.0
CB A:LYS83 3.9 20.9 1.0
N A:ASP87 4.0 23.4 0.8
N A:ASP87 4.0 24.0 0.2
CB A:ALA86 4.0 25.4 1.0
O A:HOH160 4.1 59.2 1.0
CB A:ASP87 4.2 26.4 0.2
CG A:LYS83 4.4 22.9 1.0
CB A:ASP87 4.4 28.4 0.8
O A:HOH174 4.5 35.2 1.0
CA A:ASP87 4.5 25.5 0.2
CA A:ASP87 4.5 26.0 0.8
C A:ALA86 4.6 24.5 1.0
N A:ALA84 4.8 17.2 1.0
CA A:ALA86 4.9 22.7 1.0

Reference:

M.Ozga, R.Dolot, M.Janicka, R.Kaczmarek, A.Krakowiak. Histidine Triad Nucleotide-Binding Protein 1 (Hint-1) Phosphoramidase Transforms Nucleoside 5'-O-Phosphorothioates to Nucleoside 5'-O-Phosphates. J.Biol.Chem. V. 285 40809 2010.
ISSN: ISSN 0021-9258
PubMed: 20940308
DOI: 10.1074/JBC.M110.162065
Page generated: Tue Dec 15 06:19:33 2020

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