Sodium in the structure of X-Ray Crystal Structure of The Wlbe (Wpbe) Aminotransferase From Pseudomonas Aeruginosa, Mutation K185A, in Complex With the Plp External Aldimine Adduct With Udp-3-Amino-2-N-Acetyl-Glucuronic Acid, At 1.3 Angstrom Resolution (pdb 3nyt)

The binding sites of Sodium atom in the structure of X-Ray Crystal Structure of The Wlbe (Wpbe) Aminotransferase From Pseudomonas Aeruginosa, Mutation K185A, in Complex With the Plp External Aldimine Adduct With Udp-3-Amino-2-N-Acetyl-Glucuronic Acid, At 1.3 Angstrom Resolution (pdb code 3nyt). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3nyt structure was solved by H.M.HOLDEN, J.B.THODEN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 30.0-1.3 Space group C121 a (A) 59.684 b (A) 92.170 c (A) 75.652 alpha (°) 90.00 beta (°) 111.84 gamma (°) 90.00 Rfactor (%) 19 Rfree (%) 21.6 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3nyt Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3nyt. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ala57, A: Asp192, A: Arg229, A: Asp231, A: Hoh505, A: Hoh528, A: Hoh534, A: Hoh569, A: Hoh777, conact list: Atom Atom Distance (A) Na O A:Ala57 4.91 Na O A:Asp192 4.34 Na CB A:Asp192 4.87 Na O A:Arg229 4.84 Na OD2 A:Asp231 4.03 Na OD1 A:Asp231 4.13 Na CG A:Asp231 4.39 Na O A:Hoh505 4.19 Na O A:Hoh528 2.24 Na O A:Hoh534 2.08 Na O A:Hoh569 2.23 Na O A:Hoh777 4.18 interactive model: