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Sodium in PDB 3nuq: Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae

Enzymatic activity of Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae

All present enzymatic activity of Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae:
3.1.3.5;

Protein crystallography data

The structure of Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae, PDB code: 3nuq was solved by A.Dong, C.Yang, A.U.Singer, E.Evdokimova, M.Kudritsdka, G.Brown, A.M.Edwards, A.Joachimiak, A.Savchenko, A.F.Yakunin, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.38 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.474, 64.664, 67.708, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 22.6

Other elements in 3nuq:

The structure of Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae (pdb code 3nuq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae, PDB code: 3nuq:

Sodium binding site 1 out of 1 in 3nuq

Go back to Sodium Binding Sites List in 3nuq
Sodium binding site 1 out of 1 in the Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na283

b:13.6
occ:1.00
 OD2 A:ASP61 2.1 24.9 1.0
OD1 A:ASP228 2.2 15.9 1.0
O A:HOH371 2.3 17.6 1.0
O A:HOH373 2.4 21.9 1.0
O A:ASP63 2.5 11.8 1.0
O A:HOH372 2.5 21.6 1.0
CG A:ASP61 3.0 17.2 1.0
CG A:ASP228 3.2 15.6 1.0
OD1 A:ASP61 3.3 21.4 1.0
C A:ASP63 3.6 11.2 1.0
OD2 A:ASP228 3.6 18.6 1.0
O A:LYS105 4.0 14.2 1.0
OD1 A:ASP227 4.2 16.7 1.0
O A:HOH354 4.2 19.1 1.0
O A:HOH298 4.2 17.4 1.0
SG A:CYS65 4.2 13.5 0.5
CA A:ASP63 4.3 11.1 1.0
CB A:ASP63 4.3 11.0 1.0
CB A:ASP61 4.4 11.8 1.0
N A:ASP63 4.4 10.8 1.0
CB A:ASN64 4.5 12.3 1.0
O A:HOH416 4.5 18.4 1.0
CB A:ASP228 4.5 13.2 1.0
ND2 A:ASN64 4.6 12.4 1.0
N A:ASP228 4.6 10.9 1.0
N A:ASN64 4.7 11.7 1.0
CA A:ASN64 4.9 11.9 1.0
C A:ASN64 5.0 12.8 1.0

Reference:

G.Brown, E.Evdokimova, M.Kudritska, A.Dong, C.Yang, A.U.Singer, A.M.Edwards, A.Savchenko, A.F.Yakunin. Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae To Be Published.
Page generated: Mon Oct 7 11:54:23 2024

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