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Sodium in PDB 3nf4: Crystal Structure of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound to Flavin Adenine Dinucleotide

Protein crystallography data

The structure of Crystal Structure of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound to Flavin Adenine Dinucleotide, PDB code: 3nf4 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.69 / 2.35
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.650, 99.230, 171.490, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 24

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound to Flavin Adenine Dinucleotide (pdb code 3nf4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound to Flavin Adenine Dinucleotide, PDB code: 3nf4:

Sodium binding site 1 out of 1 in 3nf4

Go back to Sodium Binding Sites List in 3nf4
Sodium binding site 1 out of 1 in the Crystal Structure of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound to Flavin Adenine Dinucleotide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound to Flavin Adenine Dinucleotide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na384

b:35.5
occ:1.00
OE1 B:GLU124 2.7 64.1 1.0
OE2 B:GLU124 3.0 64.3 1.0
CD B:GLU124 3.2 63.1 1.0
O B:HOH462 4.0 26.3 1.0
CG B:GLU124 4.8 58.6 1.0

Reference:

L.Baugh, I.Phan, D.W.Begley, M.C.Clifton, B.Armour, D.M.Dranow, B.M.Taylor, M.M.Muruthi, J.Abendroth, J.W.Fairman, D.Fox, S.H.Dieterich, B.L.Staker, A.S.Gardberg, R.Choi, S.N.Hewitt, A.J.Napuli, J.Myers, L.K.Barrett, Y.Zhang, M.Ferrell, E.Mundt, K.Thompkins, N.Tran, S.Lyons-Abbott, A.Abramov, A.Sekar, D.Serbzhinskiy, D.Lorimer, G.W.Buchko, R.Stacy, L.J.Stewart, T.E.Edwards, W.C.Van Voorhis, P.J.Myler. Increasing the Structural Coverage of Tuberculosis Drug Targets. Tuberculosis (Edinb) V. 95 142 2015.
ISSN: ISSN 1472-9792
PubMed: 25613812
DOI: 10.1016/J.TUBE.2014.12.003
Page generated: Tue Dec 15 06:19:04 2020

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