Sodium in the structure of Crystal Structure of A Susd Superfamily Protein (BVU_0732) From Bacteroides Vulgatus Atcc 8482 At 1.80 A Resolution (pdb 3myv)

The binding sites of Sodium atom in the structure of Crystal Structure of A Susd Superfamily Protein (BVU_0732) From Bacteroides Vulgatus Atcc 8482 At 1.80 A Resolution (pdb code 3myv). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3myv structure was solved by JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 74.4-1.8 Space group P212121 a (A) 55.136 b (A) 83.639 c (A) 223.303 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 15.1 Rfree (%) 19 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3myv Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3myv. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asn280, A: Ser281, A: Val282, A: Asp284, A: Thr285, A: Pro286, A: Gly287, A: Leu351, A: Glu352, A: Hoh593, conact list: Atom Atom Distance (A) Na CB A:Asn280 4.61 Na ND2 A:Asn280 3.45 Na C A:Asn280 4.90 Na OD1 A:Asn280 2.35 Na CG A:Asn280 3.21 Na O A:Ser281 2.38 Na N A:Ser281 3.98 Na C A:Ser281 3.52 Na CA A:Ser281 4.41 Na O A:Val282 4.37 Na N A:Val282 4.40 Na C A:Val282 4.42 Na CA A:Val282 4.39 Na CA A:Val282 4.42 Na O A:Asp284 2.53 Na N A:Asp284 4.28 Na CB A:Asp284 4.66 Na C A:Asp284 3.67 Na CA A:Asp284 4.45 Na O A:Thr285 4.74 Na N A:Thr285 4.62 Na C A:Thr285 4.43 Na CA A:Thr285 4.63 Na O A:Pro286 2.49 Na N A:Pro286 4.45 Na CD A:Pro286 4.97 Na C A:Pro286 3.47 Na CA A:Pro286 4.58 Na N A:Gly287 4.03 Na CA A:Gly287 3.96 Na O A:Leu351 2.48 Na CB A:Leu351 4.54 Na C A:Leu351 3.57 Na CA A:Leu351 4.60 Na N A:Glu352 4.29 Na CB A:Glu352 4.87 Na CA A:Glu352 4.10 Na O A:Hoh593 2.45 interactive model: