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Sodium in PDB 3mok: Structure of Apo Hasap From Pseudomonas Aeruginosa to 1.55A Resolution

Protein crystallography data

The structure of Structure of Apo Hasap From Pseudomonas Aeruginosa to 1.55A Resolution, PDB code: 3mok was solved by S.Lovell, K.P.Battaile, G.Jepkorir, J.C.Rodriguez, H.Rui, W.Im, A.Y.Alontaga, E.Yukl, P.Moenne-Loccoz, M.Rivera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.92 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 32.984, 65.247, 38.343, 90.00, 110.48, 90.00
R / Rfree (%) 15.2 / 17.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Apo Hasap From Pseudomonas Aeruginosa to 1.55A Resolution (pdb code 3mok). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Apo Hasap From Pseudomonas Aeruginosa to 1.55A Resolution, PDB code: 3mok:

Sodium binding site 1 out of 1 in 3mok

Go back to Sodium Binding Sites List in 3mok
Sodium binding site 1 out of 1 in the Structure of Apo Hasap From Pseudomonas Aeruginosa to 1.55A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Apo Hasap From Pseudomonas Aeruginosa to 1.55A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na185

b:19.3
occ:1.00
O A:HOH342 2.2 41.9 1.0
O A:HOH232 2.3 20.3 1.0
OD2 A:ASP64 2.4 15.1 1.0
O A:VAL37 2.5 16.5 1.0
OD1 A:ASP39 2.5 26.2 1.0
O A:HOH325 2.9 25.6 1.0
O A:HOH242 3.0 24.3 1.0
CG A:ASP64 3.5 14.1 1.0
CG A:ASP39 3.6 25.0 1.0
C A:VAL37 3.7 16.9 1.0
O A:HOH336 3.9 41.8 1.0
N A:ASP39 3.9 20.4 1.0
O A:HOH188 4.0 14.1 1.0
CB A:ASP64 4.0 13.3 1.0
OD2 A:ASP39 4.2 29.4 1.0
CG2 A:VAL37 4.3 19.4 1.0
O A:HOH343 4.4 43.7 1.0
N A:VAL37 4.4 17.6 1.0
OE1 A:GLN36 4.4 21.5 1.0
OG1 A:THR97 4.5 15.2 1.0
N A:VAL38 4.5 16.3 1.0
OD1 A:ASP96 4.5 15.4 1.0
CA A:VAL38 4.5 17.5 1.0
CA A:VAL37 4.6 17.6 1.0
OD1 A:ASP64 4.6 13.6 1.0
C A:VAL38 4.6 19.4 1.0
CA A:ASP39 4.7 21.4 1.0
CB A:ASP39 4.7 22.3 1.0
N A:GLY40 5.0 20.4 1.0

Reference:

G.Jepkorir, J.C.Rodriguez, H.Rui, W.Im, S.Lovell, K.P.Battaile, A.Y.Alontaga, E.T.Yukl, M.Rivera. Structural, uc(Nmr) Spectroscopic, and Computational Investigation of Hemin Loading in the Hemophore Hasap From Pseudomonas Aeruginosa. J.Am.Chem.Soc. V. 132 9857 2010.
ISSN: ISSN 0002-7863
PubMed: 20572666
DOI: 10.1021/JA103498Z
Page generated: Tue Dec 15 06:17:55 2020

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