Sodium in the structure of Investigation Of Global and Local Effects Of Radiation Damage on Porcine Pancreatic Elastase. Seventh Stage of Radiation Damage (pdb 3mo9)

The binding sites of Sodium atom in the structure of Investigation Of Global and Local Effects Of Radiation Damage on Porcine Pancreatic Elastase. Seventh Stage of Radiation Damage (pdb code 3mo9). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3mo9 structure was solved by T.PETROVA, S.GINELL, Y.KIM, G.JOACHIMIAK, A.JOACHIMIAK, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 41.7-2.0 Space group P212121 a (A) 50.233 b (A) 57.837 c (A) 74.733 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 14.9 Rfree (%) 23.3 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3mo9 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3mo9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu70, A: His71, A: Asn72, A: Leu73, A: Asn74, A: Gln75, A: Asn76, A: Asn77, A: Glu80, A: Hoh343, A: Hoh518, A: Hoh538, A: Hoh560, A: Hoh561, A: Hoh562, A: Hoh672, conact list: Atom Atom Distance (A) Na OE1 A:Glu70 2.93 Na OE2 A:Glu70 2.63 Na CD A:Glu70 3.13 Na CG A:Glu70 4.60 Na N A:His71 4.69 Na O A:Asn72 2.43 Na N A:Asn72 4.18 Na CB A:Asn72 4.66 Na C A:Asn72 3.56 Na CA A:Asn72 4.37 Na O A:Leu73 4.67 Na N A:Leu73 4.48 Na C A:Leu73 4.52 Na CA A:Leu73 4.50 Na N A:Asn74 4.92 Na N A:Asn74 4.95 Na O A:Gln75 2.43 Na N A:Gln75 4.31 Na C A:Gln75 3.59 Na CA A:Gln75 4.56 Na N A:Asn76 4.39 Na C A:Asn76 4.36 Na CA A:Asn76 4.27 Na N A:Asn77 3.79 Na CB A:Asn77 4.25 Na ND2 A:Asn77 4.49 Na OD1 A:Asn77 2.64 Na CG A:Asn77 3.57 Na CA A:Asn77 4.64 Na OE1 A:Glu80 4.76 Na OE2 A:Glu80 2.64 Na CD A:Glu80 3.64 Na CG A:Glu80 3.95 Na O A:Hoh343 4.93 Na O A:Hoh518 3.05 Na O A:Hoh538 4.93 Na O A:Hoh560 3.04 Na O A:Hoh561 4.69 Na O A:Hoh562 3.89 Na O A:Hoh672 4.97 interactive model: