Sodium in PDB 3mnz: Crystal Structure of the Non-Neutralizing Hiv Antibody 13H11 Fab Fragment with A GP41 Mper-Derived Peptide Bearing Ala Substitutions in A Helical Conformation

The structure of Crystal Structure of the Non-Neutralizing Hiv Antibody 13H11 Fab Fragment with A GP41 Mper-Derived Peptide Bearing Ala Substitutions in A Helical Conformation, PDB code: 3mnz was solved by N.I.Nicely, S.M.Dennison, G.Kelsoe, H.-X.Liao, S.M.Alam, B.F.Haynes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.00 / 1.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	66.890, 121.692, 58.097, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 21.5

The binding sites of Sodium atom in the Crystal Structure of the Non-Neutralizing Hiv Antibody 13H11 Fab Fragment with A GP41 Mper-Derived Peptide Bearing Ala Substitutions in A Helical Conformation (pdb code 3mnz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Non-Neutralizing Hiv Antibody 13H11 Fab Fragment with A GP41 Mper-Derived Peptide Bearing Ala Substitutions in A Helical Conformation, PDB code: 3mnz:

Sodium binding site 1 out of 1 in the Crystal Structure of the Non-Neutralizing Hiv Antibody 13H11 Fab Fragment with A GP41 Mper-Derived Peptide Bearing Ala Substitutions in A Helical Conformation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Non-Neutralizing Hiv Antibody 13H11 Fab Fragment with A GP41 Mper-Derived Peptide Bearing Ala Substitutions in A Helical Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Na231 b:29.6 occ:1.00 O B:GLU10 2.9 18.9 1.0 O B:HOH363 2.9 28.4 1.0 OG1 B:THR108 3.0 23.6 1.0 OG1 B:THR110 3.2 25.7 1.0 O B:THR108 3.4 17.2 1.0 N B:THR110 3.5 12.8 1.0 C B:THR108 3.6 15.1 1.0 N B:GLU10 3.7 17.5 1.0 CB B:THR108 3.8 20.6 1.0 C B:GLU10 3.8 18.7 1.0 N B:LEU109 3.8 16.5 1.0 CD2 B:LEU11 3.8 21.4 1.0 C B:LEU109 3.8 14.5 1.0 CA B:LEU109 3.9 16.7 1.0 CB B:THR110 3.9 21.2 1.0 CB B:PRO9 3.9 18.1 1.0 C B:PRO9 4.3 19.5 1.0 CA B:THR110 4.3 14.5 1.0 CA B:THR108 4.3 16.6 1.0 CA B:PRO9 4.3 16.9 1.0 CA B:GLU10 4.4 18.0 1.0 O B:HOH378 4.5 32.3 1.0 O B:LEU109 4.6 16.5 1.0 O B:HOH311 4.6 31.6 1.0 O B:HOH542 4.7 44.5 1.0 N B:LEU11 4.8 16.6 1.0 CG B:LEU11 4.8 19.8 1.0 O B:HOH259 4.8 20.9 1.0 O B:HOH365 5.0 47.9 1.0 O B:HOH364 5.0 25.8 1.0

N.I.Nicely, S.M.Dennison, G.Kelsoe, Y.Ueda, H.-X.Liao, S.M.Alam, B.F.Haynes. Crystal Structure of A Non-Neutralizing Hiv-1 GP41 Envelope Antibody Demonstrates Neutralization Mechanism of GP41 Antibodies To Be Published.