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Sodium in PDB 3mnb: Investigation of Global and Local Effects of Radiation Damage on Porcine Pancreatic Elastase. First Stage of Radiation Damage

Enzymatic activity of Investigation of Global and Local Effects of Radiation Damage on Porcine Pancreatic Elastase. First Stage of Radiation Damage

All present enzymatic activity of Investigation of Global and Local Effects of Radiation Damage on Porcine Pancreatic Elastase. First Stage of Radiation Damage:
3.4.21.36;

Protein crystallography data

The structure of Investigation of Global and Local Effects of Radiation Damage on Porcine Pancreatic Elastase. First Stage of Radiation Damage, PDB code: 3mnb was solved by T.Petrova, S.Ginell, Y.Kim, G.Joachimiak, A.Joachimiak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.58 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.003, 57.688, 74.337, 90.00, 90.00, 90.00
R / Rfree (%) 11.3 / 13.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Investigation of Global and Local Effects of Radiation Damage on Porcine Pancreatic Elastase. First Stage of Radiation Damage (pdb code 3mnb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Investigation of Global and Local Effects of Radiation Damage on Porcine Pancreatic Elastase. First Stage of Radiation Damage, PDB code: 3mnb:

Sodium binding site 1 out of 1 in 3mnb

Go back to Sodium Binding Sites List in 3mnb
Sodium binding site 1 out of 1 in the Investigation of Global and Local Effects of Radiation Damage on Porcine Pancreatic Elastase. First Stage of Radiation Damage


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Investigation of Global and Local Effects of Radiation Damage on Porcine Pancreatic Elastase. First Stage of Radiation Damage within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na280

b:7.6
occ:1.00
 OE2 A:GLU70 2.3 14.0 0.9
O A:ASN72 2.3 11.2 1.0
OE2 A:GLU80 2.3 11.1 1.0
O A:GLN75 2.4 13.8 1.0
O A:HOH518 2.4 10.6 0.5
OD1 A:ASN77 2.4 13.9 1.0
OE1 A:GLU70 2.8 16.7 0.9
CD A:GLU70 2.9 13.1 0.9
O A:HOH560 3.0 36.6 0.5
CD A:GLU80 3.4 10.7 1.0
C A:ASN72 3.4 10.2 1.0
CG A:ASN77 3.5 12.6 1.0
C A:GLN75 3.6 14.1 1.0
N A:ASN77 3.8 11.9 1.0
CG A:GLU80 3.9 11.5 1.0
N A:ASN72 4.0 10.1 1.0
CB A:ASN77 4.1 12.3 1.0
CA A:ASN72 4.2 10.3 1.0
CA A:ASN76 4.3 14.1 1.0
N A:GLN75 4.3 15.4 1.0
N A:ASN76 4.4 14.2 1.0
N A:LEU73 4.4 10.6 1.0
ND2 A:ASN77 4.4 11.8 1.0
C A:ASN76 4.4 13.4 1.0
CG A:GLU70 4.4 12.0 1.0
OE1 A:GLU80 4.5 11.8 1.0
O A:HOH562 4.5 21.1 0.5
CB A:ASN72 4.5 11.5 1.0
CA A:LEU73 4.6 11.3 1.0
CA A:GLN75 4.6 15.6 1.0
CA A:ASN77 4.6 12.6 1.0
N A:HIS71 4.6 9.8 1.0
C A:LEU73 4.7 14.4 1.0
O A:HOH538 4.7 22.3 0.5
O A:HOH504 4.8 33.6 0.5
N A:ASN74 4.9 15.4 0.3
O A:HOH561 4.9 11.7 0.5
N A:ASN74 4.9 14.5 0.7

Reference:

T.Petrova, S.Ginell, A.Mitschler, Y.Kim, V.Y.Lunin, G.Joachimiak, A.Cousido-Siah, I.Hazemann, A.Podjarny, K.Lazarski, A.Joachimiak. X-Ray-Induced Deterioration of Disulfide Bridges at Atomic Resolution. Acta Crystallogr.,Sect.D V. 66 1075 2010.
ISSN: ISSN 0907-4449
PubMed: 20944241
DOI: 10.1107/S0907444910033986
Page generated: Mon Oct 7 11:31:37 2024

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