Sodium in PDB 3mjf: Phosphoribosylamine-Glycine Ligase From Yersinia Pestis

All present enzymatic activity of Phosphoribosylamine-Glycine Ligase From Yersinia Pestis:
6.3.4.13;

The structure of Phosphoribosylamine-Glycine Ligase From Yersinia Pestis, PDB code: 3mjf was solved by J.Osipiuk, M.Zhou, L.Papazisi, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.80 / 1.47
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	68.637, 69.151, 95.166, 90.00, 90.00, 90.00
R / Rfree (%)	13.5 / 17.4

The binding sites of Sodium atom in the Phosphoribosylamine-Glycine Ligase From Yersinia Pestis (pdb code 3mjf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Phosphoribosylamine-Glycine Ligase From Yersinia Pestis, PDB code: 3mjf:

Sodium binding site 1 out of 1 in the Phosphoribosylamine-Glycine Ligase From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Phosphoribosylamine-Glycine Ligase From Yersinia Pestis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na513 b:13.9 occ:1.00 O A:ARG290 2.1 18.8 1.0 OD2 A:ASP214 2.4 15.4 1.0 O A:ASP293 2.5 10.8 1.0 O A:GLY228 2.5 12.3 1.0 OE1 A:GLU295 2.5 13.1 1.0 C A:ASP293 3.2 10.4 1.0 CD A:GLU295 3.3 12.9 1.0 OE2 A:GLU295 3.3 12.2 1.0 C A:ARG290 3.3 16.7 1.0 CD A:PRO294 3.4 9.9 1.0 CG A:ASP214 3.5 13.1 1.0 NZ A:LYS216 3.6 17.5 1.0 C A:GLY228 3.6 12.5 1.0 N A:PRO294 3.6 9.9 1.0 CE A:LYS216 3.8 20.2 1.0 N A:ASP293 4.0 11.3 1.0 CA A:GLY229 4.0 10.9 1.0 O A:HOH583 4.0 21.1 1.0 OD1 A:ASP214 4.1 14.4 1.0 N A:PHE291 4.2 15.0 1.0 CA A:PHE291 4.2 13.6 1.0 N A:GLY229 4.3 11.0 1.0 CA A:ASP293 4.3 10.2 1.0 CA A:ARG290 4.3 16.2 0.4 CA A:ARG290 4.3 15.2 0.6 CB A:ASP214 4.4 11.9 1.0 NH1 A:ARG383 4.5 12.1 1.0 CD A:LYS216 4.5 22.1 1.0 C A:PHE291 4.5 12.9 1.0 N A:GLY292 4.5 12.7 1.0 CG A:GLU295 4.7 11.7 1.0 CB A:ARG290 4.7 15.4 0.6 CB A:ARG290 4.7 16.8 0.4 CG A:PRO294 4.8 11.9 1.0 CA A:GLY228 4.8 12.1 1.0 N A:GLU295 4.8 9.6 1.0 C A:GLY292 5.0 10.2 1.0 CA A:PRO294 5.0 9.5 1.0

J.Osipiuk, M.Zhou, L.Papazisi, W.F.Anderson, A.Joachimiak. X-Ray Crystal Structure of Phosphoribosylamine-Glycine Ligase From Yersinia Pestis. To Be Published.