Sodium in PDB 3mj6: Crystal Structure of the Gammadelta T Cell Costimulatory Receptor Junctional Adhesion Molecule-Like Protein, Jaml

The structure of Crystal Structure of the Gammadelta T Cell Costimulatory Receptor Junctional Adhesion Molecule-Like Protein, Jaml, PDB code: 3mj6 was solved by P.Verdino, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.19
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	61.946, 61.946, 82.477, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 21.3

The binding sites of Sodium atom in the Crystal Structure of the Gammadelta T Cell Costimulatory Receptor Junctional Adhesion Molecule-Like Protein, Jaml (pdb code 3mj6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Gammadelta T Cell Costimulatory Receptor Junctional Adhesion Molecule-Like Protein, Jaml, PDB code: 3mj6:

Sodium binding site 1 out of 1 in the Crystal Structure of the Gammadelta T Cell Costimulatory Receptor Junctional Adhesion Molecule-Like Protein, Jaml


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Gammadelta T Cell Costimulatory Receptor Junctional Adhesion Molecule-Like Protein, Jaml within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:39.5 occ:1.00 O A:VAL35 2.4 28.4 1.0 OD1 A:ASN59 2.4 45.6 1.0 O A:HOH609 2.4 28.9 1.0 O A:HOH611 2.4 27.8 1.0 O A:HOH610 2.5 31.9 1.0 OH A:TYR56 2.5 34.4 1.0 CZ A:TYR56 3.5 30.1 1.0 C A:VAL35 3.6 28.7 1.0 CG A:ASN59 3.6 49.3 1.0 CE1 A:TYR56 3.7 29.0 1.0 N A:ASN59 4.1 39.1 1.0 CA A:ASN59 4.2 41.2 1.0 O A:HOH612 4.2 37.7 1.0 CA A:ASP36 4.2 29.2 1.0 N A:ASP36 4.3 28.2 1.0 O A:HOH614 4.4 46.4 1.0 CB A:ASN59 4.5 45.0 1.0 C1 A:NAG301 4.5 68.3 1.0 O A:ASP36 4.5 29.0 1.0 ND2 A:ASN59 4.5 61.5 1.0 OD1 A:ASP36 4.6 42.8 1.0 N A:VAL35 4.6 30.6 1.0 CA A:VAL35 4.6 28.6 1.0 C A:ASP36 4.7 28.3 1.0 CE2 A:TYR56 4.7 31.2 1.0 O A:THR77 4.8 36.1 1.0 CB A:HIS34 4.8 38.4 1.0

P.Verdino, D.A.Witherden, W.L.Havran, I.A.Wilson. The Molecular Interaction of Car and Jaml Recruits the Central Cell Signal Transducer PI3K. Science V. 329 1210 2010.
ISSN: ISSN 0036-8075
PubMed: 20813955
DOI: 10.1126/SCIENCE.1187996