Sodium in the structure of Crystal Structure of the Gammadelta T Cell Costimulatory Receptor Junctional Adhesion Molecule-Like Protein, Jaml (pdb 3mj6)

The binding sites of Sodium atom in the structure of Crystal Structure of the Gammadelta T Cell Costimulatory Receptor Junctional Adhesion Molecule-Like Protein, Jaml (pdb code 3mj6). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3mj6 structure was solved by P.VERDINO, I.A.WILSON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 50.0-2.2 Space group P43 a (A) 61.946 b (A) 61.946 c (A) 82.477 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 17 Rfree (%) 21.3 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3mj6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3mj6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His34, A: Val35, A: Asp36, A: Tyr56, A: Asn59, A: Thr77, A: Nag301, A: Hoh609, A: Hoh610, A: Hoh611, A: Hoh612, A: Hoh614, conact list: Atom Atom Distance (A) Na CB A:His34 4.84 Na O A:Val35 2.37 Na N A:Val35 4.61 Na C A:Val35 3.56 Na CA A:Val35 4.62 Na O A:Asp36 4.52 Na N A:Asp36 4.33 Na C A:Asp36 4.72 Na OD1 A:Asp36 4.55 Na CA A:Asp36 4.24 Na CE2 A:Tyr56 4.73 Na CZ A:Tyr56 3.50 Na CE1 A:Tyr56 3.71 Na OH A:Tyr56 2.53 Na N A:Asn59 4.13 Na CB A:Asn59 4.47 Na ND2 A:Asn59 4.53 Na OD1 A:Asn59 2.38 Na CG A:Asn59 3.59 Na CA A:Asn59 4.15 Na O A:Thr77 4.77 Na C1 A:Nag301 4.52 Na O A:Hoh609 2.39 Na O A:Hoh610 2.50 Na O A:Hoh611 2.43 Na O A:Hoh612 4.20 Na O A:Hoh614 4.43 interactive model: