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Sodium in PDB 3meq: Crystal Structure of Alcohol Dehydrogenase From Brucella Melitensis

Protein crystallography data

The structure of Crystal Structure of Alcohol Dehydrogenase From Brucella Melitensis, PDB code: 3meq was solved by T.L.Arakaki, B.L.Staker, A.Gardberg, Seattle Structural Genomics Centerfor Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.75 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 88.365, 103.799, 152.390, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 20.4

Other elements in 3meq:

The structure of Crystal Structure of Alcohol Dehydrogenase From Brucella Melitensis also contains other interesting chemical elements:

Zinc (Zn) 8 atoms
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Alcohol Dehydrogenase From Brucella Melitensis (pdb code 3meq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Alcohol Dehydrogenase From Brucella Melitensis, PDB code: 3meq:

Sodium binding site 1 out of 1 in 3meq

Go back to Sodium Binding Sites List in 3meq
Sodium binding site 1 out of 1 in the Crystal Structure of Alcohol Dehydrogenase From Brucella Melitensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Alcohol Dehydrogenase From Brucella Melitensis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na347

b:37.3
occ:0.50
O C:VAL129 2.4 46.0 1.0
O C:ASN121 2.8 45.3 1.0
C C:VAL129 3.4 46.2 1.0
CE1 C:TYR93 3.7 43.8 1.0
OH C:TYR93 3.7 46.0 1.0
N C:VAL129 3.8 47.5 1.0
C C:ASN121 3.9 45.6 1.0
CG2 C:VAL128 3.9 47.3 1.0
CA C:VAL129 4.0 47.6 1.0
CZ C:TYR93 4.1 44.5 1.0
N C:ASN121 4.3 45.2 1.0
CG2 C:VAL120 4.3 43.5 1.0
CB C:VAL129 4.3 48.3 1.0
CA C:ASN121 4.3 45.9 1.0
CB C:ASN121 4.3 47.5 1.0
N C:ALA130 4.5 45.4 1.0
CB C:VAL120 4.6 43.2 1.0
CD1 C:TYR93 4.7 43.5 1.0
C C:VAL128 4.8 48.0 1.0
CG1 C:VAL129 4.8 48.8 1.0
C C:VAL120 4.9 43.8 1.0
CA C:ALA130 5.0 44.0 1.0

Reference:

T.L.Arakaki, A.Gardberg, B.L.Staker, B.Sankaran. Crystal Structure of Alcohol Dehydrogenase From Brucella Melitensis To Be Published.
Page generated: Tue Dec 15 06:17:33 2020

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