Sodium in PDB 3me2: Crystal Structure of Mouse Rankl-Rank Complex

The structure of Crystal Structure of Mouse Rankl-Rank Complex, PDB code: 3me2 was solved by S.W.Walter, C.Z.Liu, X.K.Zhu, Y.Wu, R.J.Owens, D.I.Stuart, B.Gao, J.Ren, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.80
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	121.225, 121.225, 94.995, 90.00, 90.00, 120.00
R / Rfree (%)	17.4 / 20.5

The structure of Crystal Structure of Mouse Rankl-Rank Complex also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Sodium atom in the Crystal Structure of Mouse Rankl-Rank Complex (pdb code 3me2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mouse Rankl-Rank Complex, PDB code: 3me2:

Sodium binding site 1 out of 1 in the Crystal Structure of Mouse Rankl-Rank Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mouse Rankl-Rank Complex within 5.0Å range: probe atom residue distance (Å) B Occ R:Na1 b:36.8 occ:1.00 O R:PHE138 2.4 50.9 1.0 OG R:SER161 2.5 46.7 1.0 O R:VAL163 2.6 50.0 1.0 O R:HOH239 2.7 41.3 1.0 O R:CYS134 2.7 52.8 1.0 O R:ALA135 3.0 52.9 1.0 C R:CYS134 3.5 52.6 1.0 C R:ALA135 3.6 54.5 1.0 CB R:SER161 3.6 46.2 1.0 C R:PHE138 3.6 52.1 1.0 C R:VAL163 3.8 51.5 1.0 CB R:CYS134 3.9 53.2 1.0 N R:PRO136 4.2 55.7 1.0 N R:ALA135 4.3 53.9 1.0 N R:SER165 4.3 49.5 1.0 CA R:PRO136 4.3 55.1 1.0 CA R:CYS134 4.3 52.3 1.0 CA R:ALA135 4.4 54.8 1.0 N R:PHE138 4.5 54.5 1.0 CA R:GLY139 4.5 50.8 1.0 N R:GLY139 4.5 52.5 1.0 CA R:PHE138 4.6 54.2 1.0 CA R:PHE164 4.6 52.4 1.0 O R:SER165 4.6 49.6 1.0 N R:VAL163 4.6 53.2 1.0 N R:PHE164 4.7 52.7 1.0 CG2 R:VAL163 4.7 48.6 1.0 CA R:VAL163 4.8 51.8 1.0 C R:PHE164 4.8 51.9 1.0 CA R:SER161 4.8 47.3 1.0 O R:ASP168 4.8 52.8 1.0 CB R:SER165 4.9 48.8 1.0 N R:GLY137 4.9 55.5 1.0 C R:SER161 5.0 50.0 1.0 C R:PRO136 5.0 56.1 1.0 CB R:PHE138 5.0 56.6 1.0

C.Liu, T.S.Walter, P.Huang, S.Zhang, X.Zhu, Y.Wu, L.R.Wedderburn, P.Tang, R.J.Owens, D.I.Stuart, J.Ren, B.Gao. Structural and Functional Insights of Rankl-Rank Interaction and Signaling. J.Immunol. 2010.
ISSN: ISSN 0022-1767
PubMed: 20483727
DOI: 10.4049/JIMMUNOL.0904033