Sodium in PDB 3mcq: Crystal Structure of Thiamine-Monophosphate Kinase (MFLA_0573) From Methylobacillus Flagellatus Kt at 1.91 A Resolution

All present enzymatic activity of Crystal Structure of Thiamine-Monophosphate Kinase (MFLA_0573) From Methylobacillus Flagellatus Kt at 1.91 A Resolution:
2.7.4.16;

The structure of Crystal Structure of Thiamine-Monophosphate Kinase (MFLA_0573) From Methylobacillus Flagellatus Kt at 1.91 A Resolution, PDB code: 3mcq was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.12 / 1.91
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	59.225, 59.225, 159.766, 90.00, 90.00, 120.00
R / Rfree (%)	19.7 / 22.8

The binding sites of Sodium atom in the Crystal Structure of Thiamine-Monophosphate Kinase (MFLA_0573) From Methylobacillus Flagellatus Kt at 1.91 A Resolution (pdb code 3mcq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Thiamine-Monophosphate Kinase (MFLA_0573) From Methylobacillus Flagellatus Kt at 1.91 A Resolution, PDB code: 3mcq:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Thiamine-Monophosphate Kinase (MFLA_0573) From Methylobacillus Flagellatus Kt at 1.91 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Thiamine-Monophosphate Kinase (MFLA_0573) From Methylobacillus Flagellatus Kt at 1.91 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na319 b:43.6 occ:1.00 O A:HOH357 2.4 21.4 1.0 OH2 A:1PE328 2.5 47.3 1.0 OH5 A:1PE328 2.5 51.4 1.0 OH3 A:1PE328 2.6 44.4 1.0 OH4 A:1PE328 2.7 49.2 1.0 OH6 A:1PE328 2.8 55.2 1.0 C22 A:1PE328 3.3 45.5 1.0 C25 A:1PE328 3.4 53.8 1.0 C12 A:1PE328 3.4 44.8 1.0 C15 A:1PE328 3.5 54.6 1.0 C23 A:1PE328 3.6 45.2 1.0 C14 A:1PE328 3.6 49.9 1.0 C24 A:1PE328 3.6 48.8 1.0 C13 A:1PE328 3.7 46.8 1.0 C26 A:1PE328 4.0 58.6 1.0 C16 A:1PE328 4.2 60.1 1.0 OD1 A:ASP284 4.2 22.0 1.0 OD2 A:ASP284 4.2 23.4 1.0 CG A:ASP284 4.7 22.2 1.0 O A:LYS236 4.8 16.8 1.0 N A:LYS236 4.9 18.2 1.0 OH7 A:1PE328 5.0 61.9 1.0 CA A:PRO235 5.0 18.8 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Thiamine-Monophosphate Kinase (MFLA_0573) From Methylobacillus Flagellatus Kt at 1.91 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Thiamine-Monophosphate Kinase (MFLA_0573) From Methylobacillus Flagellatus Kt at 1.91 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na320 b:53.2 occ:1.00 O1 A:PG4327 2.5 38.3 1.0 O A:HOH400 2.6 26.0 1.0 O3 A:PG4327 2.8 34.7 1.0 O2 A:PG4327 2.9 30.6 1.0 C1 A:PG4327 3.6 35.8 1.0 O4 A:PG4327 3.6 40.6 1.0 C6 A:PG4327 3.6 38.7 1.0 C2 A:PG4327 3.7 33.5 1.0 C5 A:PG4327 3.8 37.3 1.0 C3 A:PG4327 3.8 32.6 1.0 C4 A:PG4327 3.8 34.1 1.0 NZ A:LYS63 4.0 18.3 1.0 OD2 A:ASP258 4.1 29.0 1.0 CE A:LYS63 4.1 21.4 1.0 CD A:LYS63 4.6 19.1 1.0 C7 A:PG4327 4.9 43.7 1.0 O5 A:PG4327 4.9 45.4 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.