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Sodium in PDB 3m92: The Structure of Ycin, An Unchracterized Protein From Shigella Flexneri.

Protein crystallography data

The structure of The Structure of Ycin, An Unchracterized Protein From Shigella Flexneri., PDB code: 3m92 was solved by M.E.Cuff, X.Xu, H.Cui, S.Chin, A.Savchenko, A.Edwards, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.18 / 2.05
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 56.350, 56.350, 132.260, 90.00, 90.00, 120.00
R / Rfree (%) 19.8 / 24.1

Other elements in 3m92:

The structure of The Structure of Ycin, An Unchracterized Protein From Shigella Flexneri. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the The Structure of Ycin, An Unchracterized Protein From Shigella Flexneri. (pdb code 3m92). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of Ycin, An Unchracterized Protein From Shigella Flexneri., PDB code: 3m92:

Sodium binding site 1 out of 1 in 3m92

Go back to Sodium Binding Sites List in 3m92
Sodium binding site 1 out of 1 in the The Structure of Ycin, An Unchracterized Protein From Shigella Flexneri.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of Ycin, An Unchracterized Protein From Shigella Flexneri. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na86

b:48.9
occ:1.00
O B:HOH133 2.2 36.6 1.0
O B:HOH130 2.3 30.0 1.0
O B:SER76 2.4 29.8 1.0
O A:HOH98 2.4 30.0 1.0
O B:TYR79 2.5 27.7 1.0
C B:SER76 3.3 30.6 1.0
C B:TYR79 3.6 28.2 1.0
CA B:SER76 3.6 29.9 1.0
CB B:SER76 4.0 30.0 1.0
O B:GLY41 4.0 36.1 1.0
CA B:HIS80 4.2 28.0 1.0
CB B:HIS80 4.2 27.2 1.0
N B:HIS80 4.3 27.4 1.0
CG2 A:THR5 4.4 38.8 1.0
OG1 A:THR5 4.4 36.3 1.0
OE1 B:GLN38 4.5 28.8 1.0
N B:GLU77 4.6 31.9 1.0
OG B:SER76 4.7 31.9 1.0
N B:TYR79 4.7 28.7 1.0
CB A:THR5 4.7 39.3 1.0
CA B:TYR79 4.7 28.4 1.0
O B:LEU75 4.9 28.2 1.0
N B:SER76 5.0 29.0 1.0

Reference:

M.E.Cuff, X.Xu, H.Cui, S.Chin, A.Savchenko, A.Edwards, A.Joachimiak. The Structure of Ycin, An Unchracterized Protein From Shigella Flexneri. To Be Published.
Page generated: Tue Dec 15 06:17:16 2020

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