Sodium in PDB 3m8a: Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009

The structure of Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009, PDB code: 3m8a was solved by J.S.Brunzelle, Z.Wawrzak, T.Skarina, A.Savchenko, W.F.Anderson, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.25 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	60.847, 156.795, 73.523, 90.00, 109.21, 90.00
R / Rfree (%)	17 / 20.4

The binding sites of Sodium atom in the Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009 (pdb code 3m8a). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009, PDB code: 3m8a:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na101 b:36.1 occ:1.00 O H:ASN25 2.2 29.9 1.0 O C:MET1 2.2 34.6 0.6 O C:MET1 2.2 35.4 0.4 O C:HOH254 2.3 31.6 1.0 O H:HOH106 2.3 27.3 1.0 O H:HOH924 2.5 41.5 1.0 O C:HOH381 2.6 43.1 1.0 C H:ASN25 3.4 28.9 1.0 C C:MET1 3.4 35.5 0.6 C C:MET1 3.4 36.2 0.4 CA H:ASN25 4.1 25.4 1.0 N C:MET1 4.2 37.4 0.6 N C:MET1 4.2 38.0 0.4 O C:HOH158 4.2 33.5 1.0 N C:ASP2 4.2 30.4 1.0 CA C:ASP2 4.2 28.7 1.0 CB H:ASN25 4.3 26.6 1.0 N H:GLY26 4.4 24.6 1.0 CA C:MET1 4.4 36.3 0.4 CA C:MET1 4.4 35.3 0.6 O H:HOH127 4.4 22.0 1.0 O H:HOH82 4.5 31.3 1.0 CB C:ASP2 4.6 30.6 1.0 CA H:GLY26 4.7 24.5 1.0 OD2 C:ASP2 4.8 47.1 1.0 CD2 H:LEU27 4.9 23.6 1.0 OD1 H:ASN25 4.9 41.0 1.0 C H:GLY26 4.9 28.3 1.0 CB C:ALA0 5.0 44.4 1.0

Sodium binding site 2 out of 4 in the Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009 within 5.0Å range: probe atom residue distance (Å) B Occ I:Na100 b:50.5 occ:1.00 O I:MET1 2.3 38.3 1.0 O L:HOH1055 2.8 20.5 1.0 C I:MET1 3.0 37.8 1.0 O I:HOH78 3.1 34.0 1.0 CA I:MET1 3.3 36.1 1.0 O L:HOH1054 3.4 40.0 1.0 OG1 I:THR5 3.5 19.8 1.0 CB L:ASP29 3.5 15.2 1.0 CB I:MET1 3.6 38.1 1.0 N I:ASP2 4.1 31.2 1.0 CA L:ASP29 4.3 13.5 1.0 O I:HOH872 4.4 53.9 1.0 OD2 L:ASP29 4.5 23.1 1.0 CG L:ASP29 4.5 20.7 1.0 CB I:ASN4 4.5 15.5 1.0 N I:THR5 4.6 16.1 1.0 CG I:MET1 4.7 41.0 1.0 N I:MET1 4.7 36.5 1.0 CB I:THR5 4.7 20.3 1.0 N L:ALA30 4.8 15.4 1.0 CA I:ASP2 4.8 29.2 1.0

Sodium binding site 3 out of 4 in the Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009 within 5.0Å range: probe atom residue distance (Å) B Occ J:Na100 b:40.4 occ:1.00 O J:MET1 2.2 32.5 1.0 O J:HOH1044 2.3 41.0 1.0 C J:MET1 3.3 33.4 1.0 N J:MET1 4.1 36.4 1.0 N J:ASP2 4.1 26.7 1.0 CA J:ASP2 4.2 25.1 1.0 CA J:MET1 4.3 34.7 1.0 O J:HOH1041 4.4 52.3 1.0 CB J:ASP2 4.5 26.4 1.0 O J:HOH733 4.8 22.6 1.0 OD1 J:ASP2 4.8 38.7 1.0

Sodium binding site 4 out of 4 in the Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009 within 5.0Å range: probe atom residue distance (Å) B Occ L:Na100 b:52.4 occ:1.00 O L:MET1 2.2 40.6 1.0 O L:HOH517 2.3 41.0 1.0 C L:MET1 3.4 42.0 1.0 N L:MET1 4.1 45.1 1.0 N L:ASP2 4.2 36.3 1.0 CA L:ASP2 4.2 33.7 1.0 CA L:MET1 4.3 43.0 1.0 CB L:ASP2 4.5 36.0 1.0 CB L:ALA0 4.6 52.6 1.0 OD1 L:ASP2 4.7 48.2 1.0

J.S.Brunzelle, Z.Wawrzak, T.Skarina, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009 To Be Published.