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Sodium in PDB 3m3u: Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals

Enzymatic activity of Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals

All present enzymatic activity of Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals:
3.2.1.17;

Protein crystallography data

The structure of Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals, PDB code: 3m3u was solved by N.K.Varshney, V.Sitaramam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.77 / 2.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.095, 79.095, 38.108, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 19.9

Other elements in 3m3u:

The structure of Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals (pdb code 3m3u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals, PDB code: 3m3u:

Sodium binding site 1 out of 1 in 3m3u

Go back to Sodium Binding Sites List in 3m3u
Sodium binding site 1 out of 1 in the Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na130

b:38.5
occ:1.00
 O A:SER60 2.3 21.2 1.0
O A:CYS64 2.4 15.5 1.0
O A:ARG73 2.5 33.9 1.0
OG A:SER72 2.8 35.2 1.0
O A:HOH192 2.8 33.3 1.0
O A:HOH163 2.8 22.4 1.0
CB A:SER72 3.1 35.6 1.0
C A:CYS64 3.3 16.1 1.0
C A:SER60 3.4 20.2 1.0
C A:ARG73 3.6 32.5 1.0
O A:ARG61 3.8 23.5 1.0
N A:ARG73 3.9 34.3 1.0
N A:CYS64 3.9 16.8 1.0
C A:SER72 4.0 35.3 1.0
C A:ARG61 4.1 23.2 1.0
N A:ASN65 4.1 16.7 1.0
CA A:SER72 4.1 35.9 1.0
CA A:ASN65 4.2 17.0 1.0
CA A:SER60 4.2 18.6 1.0
CA A:CYS64 4.3 16.6 1.0
CA A:ASN74 4.3 26.6 1.0
N A:ASN74 4.4 29.8 1.0
N A:ARG61 4.4 21.4 1.0
CA A:ARG73 4.4 34.1 1.0
N A:TRP63 4.5 20.1 1.0
CA A:ARG61 4.5 22.9 1.0
N A:TRP62 4.5 23.7 1.0
O A:SER72 4.6 34.5 1.0
C A:TRP62 4.6 22.5 1.0
CB A:ASN74 4.6 26.2 1.0
CB A:SER60 4.7 17.2 1.0
CA A:TRP62 4.9 24.3 1.0
C A:TRP63 4.9 16.8 1.0
O A:TRP62 4.9 23.3 1.0

Reference:

N.K.Varshney, V.Sitaramam. Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals To Be Published.
Page generated: Mon Oct 7 11:25:48 2024

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