Atomistry » Sodium » PDB 3lbg-3m9y » 3m3m
Atomistry »
  Sodium »
    PDB 3lbg-3m9y »
      3m3m »

Sodium in PDB 3m3m: Crystal Structure of Glutathione S-Transferase From Pseudomonas Fluorescens [Pf-5]

Enzymatic activity of Crystal Structure of Glutathione S-Transferase From Pseudomonas Fluorescens [Pf-5]

All present enzymatic activity of Crystal Structure of Glutathione S-Transferase From Pseudomonas Fluorescens [Pf-5]:
2.5.1.18;

Protein crystallography data

The structure of Crystal Structure of Glutathione S-Transferase From Pseudomonas Fluorescens [Pf-5], PDB code: 3m3m was solved by A.Bagaria, S.K.Burley, S.Swaminathan, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.43 / 1.75
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 101.746, 101.746, 48.880, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 19.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Glutathione S-Transferase From Pseudomonas Fluorescens [Pf-5] (pdb code 3m3m). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Glutathione S-Transferase From Pseudomonas Fluorescens [Pf-5], PDB code: 3m3m:

Sodium binding site 1 out of 1 in 3m3m

Go back to Sodium Binding Sites List in 3m3m
Sodium binding site 1 out of 1 in the Crystal Structure of Glutathione S-Transferase From Pseudomonas Fluorescens [Pf-5]


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Glutathione S-Transferase From Pseudomonas Fluorescens [Pf-5] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na210

b:15.6
occ:1.00
O12 A:GSH209 2.8 10.1 1.0
OE1 A:GLU66 2.9 7.9 1.0
N A:ASN68 2.9 6.5 1.0
CD A:GLN99 3.4 9.0 1.0
C1 A:GSH209 3.4 6.8 1.0
CB A:ASN68 3.4 7.1 1.0
N A:SER67 3.4 7.1 1.0
OG A:SER67 3.5 6.5 1.0
NE2 A:GLN99 3.6 7.4 1.0
OE1 A:GLN99 3.6 15.2 1.0
CB A:GLU66 3.7 7.3 1.0
CG A:ASN68 3.7 9.8 1.0
C A:GLU66 3.7 5.3 1.0
CA A:ASN68 3.7 6.9 1.0
CG A:GLN99 3.8 11.3 1.0
CA A:GLU66 3.9 5.8 1.0
N1 A:GSH209 3.9 7.5 1.0
CD A:GLU66 3.9 8.8 1.0
C A:SER67 4.0 6.3 1.0
O11 A:GSH209 4.0 9.2 1.0
ND2 A:ASN68 4.0 10.4 1.0
CA A:SER67 4.1 6.8 1.0
OD1 A:ASN68 4.2 13.9 1.0
CA1 A:GSH209 4.2 7.7 1.0
CG A:GLU66 4.3 7.9 1.0
O A:GLU66 4.3 5.7 1.0
CB A:SER67 4.3 8.5 1.0
N A:ALA69 4.5 7.0 1.0
C A:ASN68 4.7 8.7 1.0
OE2 A:GLU66 4.9 8.8 1.0

Reference:

A.Bagaria, S.K.Burley, S.Swaminathan. Crystal Structure of Glutathione S-Transferase From Pseudomonas Fluorescens [Pf-5] To Be Published.
Page generated: Mon Oct 7 11:25:42 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy