Sodium in PDB 3lzw: Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I)

All present enzymatic activity of Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I):
1.18.1.2;

The structure of Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I), PDB code: 3lzw was solved by H.Komori, D.Seo, T.Sakurai, Y.Higuchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.87 / 1.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	63.900, 135.724, 39.191, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 19.6

The binding sites of Sodium atom in the Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I) (pdb code 3lzw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I), PDB code: 3lzw:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na3001 b:12.8 occ:1.00 O A:ASP285 2.2 9.0 1.0 OG A:SER266 2.3 11.2 1.0 O A:HOH374 2.4 22.2 1.0 O A:HOH336 2.4 10.3 1.0 O A:HOH356 2.5 12.5 1.0 CB A:SER266 3.4 12.2 1.0 C A:ASP285 3.4 9.0 1.0 C A:ILE286 4.0 8.8 1.0 O A:ILE286 4.1 9.2 1.0 CA A:ILE286 4.1 9.2 1.0 CA A:SER266 4.2 12.3 1.0 O A:CYS287 4.2 10.4 1.0 OD1 A:ASN294 4.2 11.4 1.0 O A:ASN265 4.2 15.1 1.0 N A:ILE286 4.2 8.6 1.0 ND2 A:ASN294 4.3 15.6 1.0 O A:HOH364 4.4 23.5 1.0 CA A:ASP285 4.5 9.0 1.0 O A:HOH358 4.5 15.8 1.0 N A:CYS287 4.6 9.2 1.0 CG A:ASN294 4.6 11.5 1.0 C A:ASN265 4.7 16.0 1.0 O A:GLY120 4.7 12.1 1.0 N A:SER266 4.7 13.9 1.0 CB A:ASP285 4.9 9.3 1.0 C A:CYS287 4.9 9.7 1.0 OD1 A:ASN121 5.0 19.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na3002 b:25.2 occ:1.00 O A:HOH518 2.3 35.0 1.0 O A:HOH486 2.4 33.5 1.0 O3D A:NAP2000 2.4 21.8 1.0 O A:HOH396 2.4 17.4 1.0 O2D A:NAP2000 2.4 21.8 1.0 O A:HOH379 2.6 28.8 1.0 C3D A:NAP2000 3.4 21.0 1.0 C2D A:NAP2000 3.4 21.2 1.0 O A:HOH393 3.9 28.4 1.0 C1D A:NAP2000 4.2 20.8 1.0 OE2 A:GLU52 4.2 19.3 1.0 O A:HOH402 4.3 29.1 1.0 OD2 A:ASP164 4.4 20.6 1.0 O A:LEU49 4.4 13.1 1.0 NZ A:LYS53 4.5 25.3 1.0 O A:HOH343 4.6 20.6 1.0 C4D A:NAP2000 4.7 20.5 1.0

H.Komori, D.Seo, T.Sakurai, Y.Higuchi. Crystal Structure Analysis of Bacillus Subtilis Ferredoxin-Nadp(+) Oxidoreductase and the Structural Basis For Its Substrate Selectivity Protein Sci. V. 19 2279 2010.
ISSN: ISSN 0961-8368
PubMed: 20878669
DOI: 10.1002/PRO.508