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Sodium in PDB 3irs: Crystal Structure of Uncharacterized Tim-Barrel Protein BB4693 From Bordetella Bronchiseptica

Protein crystallography data

The structure of Crystal Structure of Uncharacterized Tim-Barrel Protein BB4693 From Bordetella Bronchiseptica, PDB code: 3irs was solved by Y.Patskovsky, V.Malashkevich, R.Toro, R.Foti, M.Dickey, J.Do, J.M.Sauder, F.M.Raushel, S.K.Burley, S.C.Almo, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.76
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 74.234, 126.775, 85.671, 90.00, 97.37, 90.00
R / Rfree (%) 16.8 / 21.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Uncharacterized Tim-Barrel Protein BB4693 From Bordetella Bronchiseptica (pdb code 3irs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Uncharacterized Tim-Barrel Protein BB4693 From Bordetella Bronchiseptica, PDB code: 3irs:

Sodium binding site 1 out of 1 in 3irs

Go back to Sodium Binding Sites List in 3irs
Sodium binding site 1 out of 1 in the Crystal Structure of Uncharacterized Tim-Barrel Protein BB4693 From Bordetella Bronchiseptica


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Uncharacterized Tim-Barrel Protein BB4693 From Bordetella Bronchiseptica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na290

b:22.0
occ:1.00
O C:HOH297 2.1 22.3 1.0
OE2 A:GLU196 2.1 32.1 1.0
O A:HOH301 2.2 22.0 1.0
O B:HOH312 2.2 25.6 1.0
OE2 B:GLU196 2.2 35.5 1.0
OE2 C:GLU196 2.3 34.0 1.0
CD B:GLU196 3.1 23.9 1.0
CD A:GLU196 3.1 18.1 1.0
CD C:GLU196 3.3 24.3 1.0
OE1 B:GLU196 3.3 25.1 1.0
OE1 A:GLU196 3.4 22.3 1.0
OE1 C:GLU196 3.5 23.1 1.0
CE3 B:TRP193 4.4 18.6 1.0
CG A:GLU196 4.5 14.4 1.0
CE3 A:TRP193 4.5 18.1 1.0
CG B:GLU196 4.5 15.8 1.0
OE1 A:GLN195 4.6 24.6 1.0
CG C:GLU196 4.6 21.1 1.0
CE3 C:TRP193 4.6 20.4 1.0
OE1 C:GLN195 4.8 19.0 1.0
OE1 B:GLN195 4.8 19.7 1.0
CZ3 B:TRP193 4.8 16.2 1.0
CZ3 A:TRP193 4.9 17.2 1.0
CZ3 C:TRP193 5.0 18.0 1.0

Reference:

Y.Patskovsky, V.Malashkevich, R.Toro, R.Foti, M.Dickey, J.M.Sauder, F.M.Raushel, S.K.Burley, S.C.Almo. Crystal Structure of Uncharacterized Hydrolase From Bordetella Bronchiseptica To Be Published.
Page generated: Tue Dec 15 06:15:19 2020

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