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Sodium in PDB 3io3: GET3 with Adp From D. Hansenii in Closed Form

Protein crystallography data

The structure of GET3 with Adp From D. Hansenii in Closed Form, PDB code: 3io3 was solved by J.Hu, J.Li, X.Qian, B.Sha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.50 / 1.80
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 59.851, 87.292, 230.589, 90.00, 90.00, 90.00
R / Rfree (%) 23.3 / 24.7

Other elements in 3io3:

The structure of GET3 with Adp From D. Hansenii in Closed Form also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the GET3 with Adp From D. Hansenii in Closed Form (pdb code 3io3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the GET3 with Adp From D. Hansenii in Closed Form, PDB code: 3io3:

Sodium binding site 1 out of 1 in 3io3

Go back to Sodium Binding Sites List in 3io3
Sodium binding site 1 out of 1 in the GET3 with Adp From D. Hansenii in Closed Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of GET3 with Adp From D. Hansenii in Closed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na353

b:61.5
occ:1.00
O A:MET256 3.1 40.5 1.0
C A:MET256 3.9 40.0 1.0
CA A:MET256 4.0 39.5 1.0
OD1 A:ASN259 4.0 41.0 1.0
CB A:MET256 4.1 39.7 1.0
CA A:ASN259 4.3 39.1 1.0
CG A:MET256 4.4 41.8 1.0
CE A:MET256 4.5 46.6 1.0
O A:HOH519 4.6 44.7 1.0
N A:ASN259 4.8 39.4 1.0
CG A:ASN259 4.9 40.1 1.0
CB A:ASN259 5.0 39.4 1.0

Reference:

J.Hu, J.Li, X.Qian, V.Denic, B.Sha. The Crystal Structures of Yeast GET3 Suggest A Mechanism For Tail-Anchored Protein Membrane Insertion Plos One V. 4 E8061 2009.
ISSN: ESSN 1932-6203
PubMed: 19956640
DOI: 10.1371/JOURNAL.PONE.0008061
Page generated: Tue Dec 15 06:15:12 2020

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