Sodium in PDB 3io1: Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae

The structure of Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae, PDB code: 3io1 was solved by D.Kumaran, K.Baumann, S.K.Burley, S.Swaminathan, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.02 / 2.50
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	183.390, 48.519, 107.998, 90.00, 90.00, 90.00
R / Rfree (%)	22.4 / 26

The structure of Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae also contains other interesting chemical elements:

Yttrium

(Y)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae (pdb code 3io1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae, PDB code: 3io1:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:49.3 occ:1.00 OD2 A:ASP151 2.3 63.8 1.0 OD2 A:ASP116 2.4 60.5 1.0 OD1 A:ASP151 2.4 62.2 1.0 OE1 A:GLU183 2.4 40.5 1.0 CG A:ASP151 2.7 63.5 1.0 CG A:ASP116 3.4 57.1 1.0 CD A:GLU183 3.4 41.3 1.0 OE2 A:GLU184 3.6 58.8 1.0 CG A:GLU183 3.9 38.4 1.0 OD1 A:ASP116 3.9 59.2 1.0 CB A:GLU183 4.0 38.6 1.0 OE1 A:GLU184 4.1 58.4 1.0 CB A:ASP151 4.2 63.6 1.0 CD A:GLU184 4.2 56.3 1.0 OE2 A:GLU183 4.3 43.3 1.0 CB A:ASP116 4.4 54.6 1.0 OD2 A:ASP118 4.5 55.9 1.0 O A:ASP118 4.6 54.2 1.0 O A:HIS150 4.6 64.7 1.0 CE1 A:HIS153 4.7 58.1 1.0 ND1 A:HIS153 4.8 58.9 1.0 CD2 A:HIS150 4.8 62.9 1.0 N A:GLU184 4.9 39.3 1.0 CA A:ASP151 5.0 63.7 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ B:Na502 b:49.7 occ:1.00 OD1 B:ASP151 2.0 38.6 1.0 OD2 B:ASP151 2.3 42.4 1.0 CG B:ASP151 2.4 39.0 1.0 OE1 B:GLU183 2.5 30.7 1.0 OE2 B:GLU184 2.8 49.3 1.0 OD2 B:ASP116 3.3 36.2 1.0 CG B:ASP116 3.4 32.5 1.0 OD1 B:ASP116 3.5 35.9 1.0 CD B:GLU183 3.6 32.0 1.0 CD B:GLU184 3.8 46.5 1.0 O B:ASP118 3.9 38.2 1.0 CB B:GLU183 3.9 25.8 1.0 CB B:ASP151 4.0 43.3 1.0 OD2 B:ASP118 4.0 37.3 1.0 CG B:GLU184 4.1 41.8 1.0 CG B:GLU183 4.2 30.5 1.0 CB B:ASP116 4.3 31.4 1.0 CG B:ASP118 4.5 33.9 1.0 N B:GLU184 4.6 29.1 1.0 OD1 B:ASP118 4.6 32.8 1.0 OE2 B:GLU183 4.7 37.1 1.0 C B:ASP118 4.7 37.8 1.0 CE1 B:HIS153 4.8 35.5 1.0 ND1 B:HIS153 4.8 35.6 1.0 OE1 B:GLU184 4.8 48.0 1.0 C B:GLU183 4.9 26.2 1.0 CA B:ASP151 4.9 44.4 1.0 CA B:GLU183 4.9 24.8 1.0

D.Kumaran, K.Baumann, S.K.Burley, S.Swaminathan. Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae To Be Published.