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Sodium in PDB 3ijm: The Structure of A Restriction Endonuclease-Like Fold Superfamily Protein From Spirosoma Linguale.

Protein crystallography data

The structure of The Structure of A Restriction Endonuclease-Like Fold Superfamily Protein From Spirosoma Linguale., PDB code: 3ijm was solved by M.E.Cuff, C.Tesar, S.Samano, J.Bearden, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.42 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.770, 65.849, 68.917, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 19.9

Sodium Binding Sites:

The binding sites of Sodium atom in the The Structure of A Restriction Endonuclease-Like Fold Superfamily Protein From Spirosoma Linguale. (pdb code 3ijm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of A Restriction Endonuclease-Like Fold Superfamily Protein From Spirosoma Linguale., PDB code: 3ijm:

Sodium binding site 1 out of 1 in 3ijm

Go back to Sodium Binding Sites List in 3ijm
Sodium binding site 1 out of 1 in the The Structure of A Restriction Endonuclease-Like Fold Superfamily Protein From Spirosoma Linguale.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of A Restriction Endonuclease-Like Fold Superfamily Protein From Spirosoma Linguale. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na151

b:26.4
occ:1.00
O A:HOH299 2.0 26.0 1.0
O A:HOH303 2.2 30.9 1.0
O A:VAL83 2.3 18.9 1.0
OD2 A:ASP66 2.3 17.9 1.0
O A:HOH154 2.3 34.7 1.0
NE2 A:HIS26 2.4 19.5 1.0
CG A:ASP66 3.2 19.0 1.0
CE1 A:HIS26 3.3 20.2 1.0
OD1 A:ASP66 3.3 18.6 1.0
CD2 A:HIS26 3.4 20.5 1.0
C A:VAL83 3.4 18.5 1.0
N A:VAL83 3.9 18.0 1.0
O A:HOH226 4.1 30.5 1.0
CA A:VAL83 4.1 18.6 1.0
OD2 A:ASP92 4.2 26.3 1.0
O A:HOH239 4.3 38.1 1.0
CB A:VAL83 4.3 19.3 1.0
OE1 A:GLU82 4.4 23.4 1.0
ND1 A:HIS26 4.4 20.4 1.0
N A:CYS84 4.5 18.8 1.0
CG A:HIS26 4.5 17.5 1.0
CB A:ASP66 4.6 17.6 1.0
O A:HOH204 4.6 22.9 1.0
CA A:CYS84 4.7 19.1 1.0
C A:GLU82 4.9 17.9 1.0
O A:HOH180 4.9 32.8 1.0

Reference:

M.E.Cuff, C.Tesar, S.Samano, J.Bearden, A.Joachimiak. The Structure of A Restriction Endonuclease-Like Fold Superfamily Protein From Spirosoma Linguale. To Be Published.
Page generated: Tue Dec 15 06:14:59 2020

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