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Sodium in PDB 3ih5: Crystal Structure of Electron Transfer Flavoprotein Alpha-Subunit From Bacteroides Thetaiotaomicron

Protein crystallography data

The structure of Crystal Structure of Electron Transfer Flavoprotein Alpha-Subunit From Bacteroides Thetaiotaomicron, PDB code: 3ih5 was solved by Y.Kim, A.Sather, S.Clancy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.88 / 2.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 102.099, 102.099, 209.169, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / 21.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Electron Transfer Flavoprotein Alpha-Subunit From Bacteroides Thetaiotaomicron (pdb code 3ih5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Electron Transfer Flavoprotein Alpha-Subunit From Bacteroides Thetaiotaomicron, PDB code: 3ih5:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 3ih5

Go back to Sodium Binding Sites List in 3ih5
Sodium binding site 1 out of 2 in the Crystal Structure of Electron Transfer Flavoprotein Alpha-Subunit From Bacteroides Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Electron Transfer Flavoprotein Alpha-Subunit From Bacteroides Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na217

b:68.8
occ:1.00
O A:HOH311 2.2 30.1 1.0
O A:ARG161 2.9 56.8 1.0
O A:HOH297 3.0 50.3 1.0
O A:HOH253 3.0 55.1 1.0
O A:LEU111 3.2 46.5 1.0
C A:ARG161 4.0 50.5 1.0
O A:HOH298 4.0 47.1 1.0
N A:ARG161 4.2 47.5 1.0
C A:LEU111 4.3 44.6 1.0
O A:THR112 4.5 52.0 1.0
O A:HOH270 4.6 51.4 1.0
CA A:ARG161 4.6 47.7 1.0
CB A:THR112 4.7 51.6 1.0
CB A:ARG161 5.0 41.9 1.0

Sodium binding site 2 out of 2 in 3ih5

Go back to Sodium Binding Sites List in 3ih5
Sodium binding site 2 out of 2 in the Crystal Structure of Electron Transfer Flavoprotein Alpha-Subunit From Bacteroides Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Electron Transfer Flavoprotein Alpha-Subunit From Bacteroides Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na216

b:60.0
occ:1.00
O D:HOH312 2.2 30.1 1.0
O D:HOH313 2.2 30.1 1.0
O D:ARG161 2.8 45.3 1.0
O D:HOH264 2.9 59.0 1.0
O D:HOH263 2.9 48.1 1.0
O D:LEU111 3.0 48.3 1.0
O D:HOH236 3.5 52.0 1.0
C D:ARG161 3.9 42.6 1.0
C D:LEU111 4.1 46.2 1.0
N D:ARG161 4.2 49.9 1.0
CA D:ARG161 4.5 45.3 1.0
O D:THR112 4.6 54.4 1.0
CB D:THR112 4.7 54.6 1.0
CA D:LEU111 4.8 42.2 1.0
CB D:LEU111 4.8 40.5 1.0
CB D:ARG161 4.9 36.2 1.0
N D:PRO162 5.0 42.7 1.0

Reference:

Y.Kim, A.Sather, S.Clancy, A.Joachimiak. Crystal Structure of Electron Transfer Flavoprotein Alpha-Subunit From Bacteroides Thetaiotaomicron To Be Published.
Page generated: Tue Dec 15 06:14:55 2020

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