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Sodium in PDB 3igz: Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at Low Cobalt Concentration

Enzymatic activity of Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at Low Cobalt Concentration

All present enzymatic activity of Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at Low Cobalt Concentration:
5.4.2.1;

Protein crystallography data

The structure of Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at Low Cobalt Concentration, PDB code: 3igz was solved by M.W.Nowicki, B.Kuaprasert, I.W.Mcnae, H.P.Morgan, M.M.Harding, P.A.Michels, L.A.Fothergill-Gilmore, M.D.Walkinshaw, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.96 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.464, 72.267, 129.678, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 18.3

Other elements in 3igz:

The structure of Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at Low Cobalt Concentration also contains other interesting chemical elements:

Cobalt (Co) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at Low Cobalt Concentration (pdb code 3igz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at Low Cobalt Concentration, PDB code: 3igz:

Sodium binding site 1 out of 1 in 3igz

Go back to Sodium Binding Sites List in 3igz
Sodium binding site 1 out of 1 in the Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at Low Cobalt Concentration


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at Low Cobalt Concentration within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na601

b:9.8
occ:1.00
O B:HOH799 2.4 14.3 1.0
OG1 B:THR41 2.4 8.5 1.0
O B:VAL36 2.5 3.1 1.0
O B:ALA39 2.5 5.8 1.0
O B:HIS37 2.6 6.8 1.0
O B:HOH759 2.8 20.4 1.0
C B:HIS37 3.3 8.8 1.0
C B:VAL36 3.6 4.5 1.0
CB B:THR41 3.6 8.3 1.0
C B:ALA39 3.6 4.6 1.0
CG2 B:THR41 3.6 5.7 1.0
CA B:HIS37 3.6 9.8 1.0
OD1 B:ASP45 3.9 8.5 1.0
N B:ALA39 3.9 5.3 1.0
N B:THR41 4.0 4.4 1.0
N B:HIS37 4.0 5.7 1.0
CA B:ALA39 4.2 7.2 1.0
O B:HOH685 4.2 9.0 1.0
N B:MET38 4.2 8.1 1.0
OD2 B:ASP45 4.2 8.2 1.0
O B:HOH912 4.2 19.0 1.0
C B:MET38 4.3 12.7 1.0
CA B:THR41 4.4 7.7 1.0
CB B:ALA39 4.4 3.9 1.0
CG B:ASP45 4.5 9.1 1.0
N B:SER40 4.6 5.6 1.0
CA B:MET38 4.7 7.0 1.0
C B:SER40 4.7 5.2 1.0
O B:HOH743 4.8 40.8 1.0
O B:MET38 4.8 11.6 1.0
CA B:VAL36 4.9 4.1 1.0
CA B:SER40 4.9 3.8 1.0

Reference:

M.W.Nowicki, B.Kuaprasert, I.W.Mcnae, H.P.Morgan, M.M.Harding, P.A.Michels, L.A.Fothergill-Gilmore, M.D.Walkinshaw. Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase Suggest A One-Metal Mechanism and A New Enzyme Subclass J.Mol.Biol. V. 394 535 2009.
ISSN: ISSN 0022-2836
PubMed: 19781556
DOI: 10.1016/J.JMB.2009.09.041
Page generated: Tue Dec 15 06:14:55 2020

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