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Sodium in PDB 3igy: Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at High Cobalt Concentrations

Enzymatic activity of Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at High Cobalt Concentrations

All present enzymatic activity of Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at High Cobalt Concentrations:
5.4.2.1;

Protein crystallography data

The structure of Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at High Cobalt Concentrations, PDB code: 3igy was solved by M.W.Nowicki, B.Kuaprasert, I.W.Mcnae, H.P.Morgan, M.M.Harding, P.A.Michels, L.A.Fothergill-Gilmore, M.D.Walkinshaw, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.01 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.746, 72.111, 129.946, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 19.9

Other elements in 3igy:

The structure of Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at High Cobalt Concentrations also contains other interesting chemical elements:

Cobalt (Co) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at High Cobalt Concentrations (pdb code 3igy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at High Cobalt Concentrations, PDB code: 3igy:

Sodium binding site 1 out of 1 in 3igy

Go back to Sodium Binding Sites List in 3igy
Sodium binding site 1 out of 1 in the Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at High Cobalt Concentrations


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase at High Cobalt Concentrations within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na601

b:18.7
occ:1.00
 O B:ALA39 2.4 12.6 1.0
OG1 B:THR41 2.4 10.7 1.0
O B:VAL36 2.4 8.9 1.0
O B:HOH714 2.5 21.1 1.0
O B:HIS37 2.6 13.8 1.0
O B:HOH775 2.8 23.2 1.0
C B:HIS37 3.3 9.6 1.0
C B:ALA39 3.4 14.3 1.0
C B:VAL36 3.6 15.2 1.0
CB B:THR41 3.6 10.5 1.0
CA B:HIS37 3.6 12.2 1.0
CG2 B:THR41 3.8 9.5 1.0
N B:ALA39 3.9 15.2 1.0
N B:THR41 3.9 10.2 1.0
OD1 B:ASP45 3.9 17.4 1.0
CA B:ALA39 4.0 18.9 1.0
N B:HIS37 4.0 9.9 1.0
O B:HOH603 4.2 11.5 1.0
OD2 B:ASP45 4.2 16.7 1.0
O B:HOH1022 4.2 32.4 1.0
N B:MET38 4.3 9.6 1.0
CB B:ALA39 4.3 12.3 1.0
C B:MET38 4.3 22.4 1.0
CA B:THR41 4.4 11.7 1.0
CG B:ASP45 4.5 15.6 1.0
N B:SER40 4.5 11.0 1.0
C B:SER40 4.6 11.3 1.0
CA B:SER40 4.8 12.1 1.0
O B:MET38 4.8 14.5 1.0
CA B:MET38 4.8 12.0 1.0
CA B:VAL36 4.8 13.9 1.0

Reference:

M.W.Nowicki, B.Kuaprasert, I.W.Mcnae, H.P.Morgan, M.M.Harding, P.A.Michels, L.A.Fothergill-Gilmore, M.D.Walkinshaw. Crystal Structures of Leishmania Mexicana Phosphoglycerate Mutase Suggest A One-Metal Mechanism and A New Enzyme Subclass J.Mol.Biol. V. 394 535 2009.
ISSN: ISSN 0022-2836
PubMed: 19781556
DOI: 10.1016/J.JMB.2009.09.041
Page generated: Mon Oct 7 10:56:57 2024

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