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Sodium in PDB 3ife: 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'.

Enzymatic activity of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'.

All present enzymatic activity of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'.:
3.4.11.4;

Protein crystallography data

The structure of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'., PDB code: 3ife was solved by G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.11 / 1.55
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.216, 142.739, 40.993, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 17.2

Other elements in 3ife:

The structure of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'. also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'. (pdb code 3ife). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'., PDB code: 3ife:

Sodium binding site 1 out of 1 in 3ife

Go back to Sodium Binding Sites List in 3ife
Sodium binding site 1 out of 1 in the 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na413

b:35.1
occ:0.70
 O2 A:SO4414 2.3 29.2 0.7
O A:HOH583 2.4 51.6 1.0
O A:HOH582 2.7 39.1 1.0
N A:GLY357 3.1 13.6 1.0
S A:SO4414 3.3 26.0 0.7
O1 A:SO4414 3.4 23.3 0.7
CA A:GLY356 3.5 13.1 1.0
O A:GLY357 3.6 19.5 1.0
C A:GLY356 3.8 13.8 1.0
OH A:TYR321 4.0 18.6 1.0
O3 A:SO4414 4.1 30.0 0.7
CA A:GLY357 4.2 15.4 1.0
C A:GLY357 4.3 16.5 1.0
O4 A:SO4414 4.4 24.9 0.7
CZ A:TYR321 4.8 16.0 1.0
N A:GLY356 4.8 11.9 1.0

Reference:

G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'. To Be Published.
Page generated: Mon Oct 7 10:56:58 2024

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