Atomistry » Sodium » PDB 3icf-3ivu » 3icf
Atomistry »
  Sodium »
    PDB 3icf-3ivu »
      3icf »

Sodium in PDB 3icf: Structure of Protein Serine/Threonine Phosphatase From Saccharomyces Cerevisiae with Similarity to Human Phosphatase PP5

Enzymatic activity of Structure of Protein Serine/Threonine Phosphatase From Saccharomyces Cerevisiae with Similarity to Human Phosphatase PP5

All present enzymatic activity of Structure of Protein Serine/Threonine Phosphatase From Saccharomyces Cerevisiae with Similarity to Human Phosphatase PP5:
3.1.3.16;

Protein crystallography data

The structure of Structure of Protein Serine/Threonine Phosphatase From Saccharomyces Cerevisiae with Similarity to Human Phosphatase PP5, PDB code: 3icf was solved by A.U.Singer, X.Xu, C.Chang, H.Cui, O.Kagan, A.M.Edwards, A.Joachimiak, A.F.Yakunin, A.Savchenko, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.29 / 2.30
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 47.194, 47.194, 237.096, 90.00, 90.00, 120.00
R / Rfree (%) 19 / 24

Other elements in 3icf:

The structure of Structure of Protein Serine/Threonine Phosphatase From Saccharomyces Cerevisiae with Similarity to Human Phosphatase PP5 also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Protein Serine/Threonine Phosphatase From Saccharomyces Cerevisiae with Similarity to Human Phosphatase PP5 (pdb code 3icf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Protein Serine/Threonine Phosphatase From Saccharomyces Cerevisiae with Similarity to Human Phosphatase PP5, PDB code: 3icf:

Sodium binding site 1 out of 1 in 3icf

Go back to Sodium Binding Sites List in 3icf
Sodium binding site 1 out of 1 in the Structure of Protein Serine/Threonine Phosphatase From Saccharomyces Cerevisiae with Similarity to Human Phosphatase PP5


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Protein Serine/Threonine Phosphatase From Saccharomyces Cerevisiae with Similarity to Human Phosphatase PP5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na515

b:47.0
occ:1.00
 O B:SER219 2.2 47.4 1.0
O A:SER219 2.2 47.1 1.0
OG1 A:THR223 2.2 47.8 1.0
OG1 B:THR223 2.2 48.0 1.0
OG A:SER219 2.4 45.1 1.0
OG B:SER219 2.5 45.0 1.0
C B:SER219 3.0 47.6 1.0
C A:SER219 3.1 47.5 1.0
CB B:THR223 3.4 48.8 1.0
CB A:THR223 3.4 48.9 1.0
CB A:SER219 3.6 47.0 1.0
CB B:SER219 3.6 46.9 1.0
CA A:SER219 3.7 46.9 1.0
CA B:SER219 3.7 47.0 1.0
N B:THR223 3.9 49.8 1.0
N A:THR223 4.0 49.5 1.0
N B:HIS220 4.0 47.9 1.0
N A:HIS220 4.0 47.9 1.0
CA B:THR223 4.2 49.3 1.0
CA A:THR223 4.2 49.4 1.0
CA B:HIS220 4.2 48.7 1.0
CA A:HIS220 4.3 48.6 1.0
O A:HOH53 4.4 42.1 1.0
CG2 B:THR223 4.5 48.9 1.0
O B:HOH56 4.5 45.8 1.0
CG2 A:THR223 4.5 48.8 1.0
OD1 B:ASP222 4.7 49.2 1.0
OD1 A:ASP222 4.7 49.3 1.0
CB A:ASP222 4.9 49.0 1.0
C B:HIS220 4.9 49.4 1.0
CB B:ASP222 4.9 49.2 1.0
C A:HIS220 5.0 49.4 1.0

Reference:

A.U.Singer, X.Xu, C.Chang, H.Cui, A.M.Edwards, A.Joachimiak, A.Savchenko, A.F.Yakunin. Structure of Protein Serine/Threonine Phosphatase From Saccharomyces Cerevisiae with Similarity to Human Phosphatase PP5 To Be Published.
Page generated: Tue Dec 15 06:14:49 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy