Sodium in PDB 3hvy: Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution

The structure of Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution, PDB code: 3hvy was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.03 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	58.830, 186.620, 93.710, 90.00, 103.06, 90.00
R / Rfree (%)	14.5 / 18.7

The binding sites of Sodium atom in the Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution (pdb code 3hvy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution, PDB code: 3hvy:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na427 b:40.0 occ:1.00 O A:HOH455 2.2 44.8 1.0 OD1 A:ASN87 2.2 31.2 1.0 O A:ASN84 2.3 28.7 1.0 O A:HOH864 2.3 61.0 1.0 OD1 A:ASN84 2.5 43.7 1.0 O2 A:EDO432 2.6 49.8 1.0 C A:ASN84 3.2 29.9 1.0 CG A:ASN87 3.4 40.2 1.0 CG A:ASN84 3.6 39.2 1.0 CA A:ASN84 3.6 29.2 1.0 C2 A:EDO432 3.8 66.7 1.0 C1 A:EDO432 4.0 55.5 1.0 CA A:ASN87 4.1 30.0 1.0 O1 A:EDO432 4.2 63.0 1.0 CB A:ASN84 4.2 31.0 1.0 CB A:ASN87 4.2 33.3 1.0 ND2 A:ASN87 4.3 30.0 1.0 N A:ASN87 4.3 30.9 1.0 N A:ILE85 4.4 29.3 1.0 ND2 A:ASN84 4.7 32.1 1.0 O A:ALA83 4.7 31.0 1.0 CA A:ILE85 4.9 30.0 1.0 O A:HOH849 4.9 59.7 1.0 N A:ASN84 4.9 30.0 1.0 C A:ILE85 5.0 31.7 1.0

Sodium binding site 2 out of 4 in the Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na427 b:36.5 occ:1.00 O B:HOH568 2.2 42.6 1.0 OD1 B:ASN87 2.3 31.3 1.0 OD1 B:ASN84 2.4 40.2 1.0 O B:ASN84 2.4 28.7 1.0 C2 B:EDO430 2.8 51.4 1.0 C B:ASN84 3.3 30.1 1.0 CG B:ASN87 3.4 37.2 1.0 CG B:ASN84 3.5 40.0 1.0 CA B:ASN84 3.6 28.8 1.0 O2 B:EDO430 3.7 45.7 1.0 C1 B:EDO430 4.0 56.4 1.0 CA B:ASN87 4.1 30.2 1.0 CB B:ASN84 4.2 31.3 1.0 CB B:ASN87 4.3 29.6 1.0 ND2 B:ASN87 4.3 32.5 1.0 N B:ASN87 4.3 30.4 1.0 N B:ILE85 4.5 29.6 1.0 ND2 B:ASN84 4.6 34.2 1.0 O1 B:EDO430 4.6 36.4 1.0 O B:ALA83 4.6 31.0 1.0 N B:ASN84 4.9 29.4 1.0 CA B:ILE85 5.0 29.1 1.0 C B:ILE85 5.0 31.0 1.0

Sodium binding site 3 out of 4 in the Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Na427 b:43.1 occ:1.00 OD1 C:ASN87 2.1 28.3 1.0 O C:HOH548 2.3 43.1 1.0 O C:ASN84 2.4 29.2 1.0 OD1 C:ASN84 2.4 37.4 1.0 C C:ASN84 3.2 30.8 1.0 CG C:ASN87 3.2 29.7 1.0 CG C:ASN84 3.6 34.1 1.0 CA C:ASN84 3.6 29.6 1.0 CA C:ASN87 4.0 30.6 1.0 ND2 C:ASN87 4.1 29.1 1.0 CB C:ASN87 4.1 26.8 1.0 CB C:ASN84 4.2 31.3 1.0 N C:ASN87 4.3 30.1 1.0 N C:ILE85 4.4 28.6 1.0 O C:ALA83 4.7 29.3 1.0 ND2 C:ASN84 4.7 28.9 1.0 O C:HOH874 4.9 62.1 1.0 CA C:ILE85 4.9 29.1 1.0 N C:ASN84 4.9 29.0 1.0 C C:ILE85 5.0 28.9 1.0

Sodium binding site 4 out of 4 in the Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Putative Cystathionine Beta-Lyase Involved in Aluminum Resistance (NP_348457.1) From Clostridium Acetobutylicum at 2.00 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Na427 b:37.1 occ:1.00 OD1 D:ASN87 2.3 33.5 1.0 OD1 D:ASN84 2.3 41.3 1.0 O D:ASN84 2.3 31.6 1.0 O D:HOH552 2.4 47.8 1.0 O D:HOH444 2.6 44.3 1.0 O D:HOH549 3.1 37.7 1.0 C D:ASN84 3.2 32.2 1.0 CG D:ASN87 3.4 33.1 1.0 CG D:ASN84 3.5 39.4 1.0 CA D:ASN84 3.7 31.5 1.0 O D:HOH624 4.0 49.8 1.0 CB D:ASN84 4.2 34.0 1.0 ND2 D:ASN87 4.2 31.5 1.0 O D:HOH867 4.2 61.1 1.0 O D:HOH600 4.2 42.2 1.0 CA D:ASN87 4.3 28.1 1.0 CB D:ASN87 4.4 27.8 1.0 N D:ILE85 4.4 28.5 1.0 N D:ASN87 4.5 25.6 1.0 ND2 D:ASN84 4.6 34.3 1.0 O D:ALA83 4.8 31.0 1.0 CA D:ILE85 4.9 29.3 1.0 O D:HOH621 4.9 49.7 1.0 C D:ILE85 5.0 29.4 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.