Sodium in PDB 3hsc: Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein

All present enzymatic activity of Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein:
3.6.1.3;

The structure of Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein, PDB code: 3hsc was solved by K.M.Flaherty, C.R.Deluca-Flaherty, D.B.Mckay, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.00 / 1.93
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	145.300, 65.000, 46.900, 90.00, 90.00, 90.00
R / Rfree (%)	21 / n/a

The structure of Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein (pdb code 3hsc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein, PDB code: 3hsc:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na490 b:39.3 occ:1.00 O2 A:PO4488 2.3 22.8 0.8 O A:HOH543 2.3 27.8 1.0 OG1 A:THR204 2.3 21.1 1.0 O1B A:ADP486 2.5 12.6 0.9 O A:HOH560 2.6 17.1 0.9 O4 A:PO4488 3.1 23.1 0.8 P A:PO4488 3.2 23.2 0.8 O A:HOH545 3.4 27.2 1.0 O A:THR204 3.4 21.8 1.0 MG A:MG487 3.5 11.0 0.8 CB A:THR204 3.6 21.3 1.0 CA A:GLY201 3.6 17.9 1.0 PB A:ADP486 3.7 13.6 0.9 N A:GLY201 3.7 17.9 1.0 C A:THR204 4.0 21.7 1.0 O2B A:ADP486 4.0 13.1 0.9 O1 A:PO4488 4.0 23.8 0.8 CA A:THR204 4.1 21.4 1.0 N A:THR204 4.2 20.8 1.0 OD1 A:ASP199 4.3 17.4 1.0 O A:HOH561 4.3 8.2 0.6 O3 A:PO4488 4.4 23.0 0.8 N A:GLY202 4.4 18.2 1.0 C A:GLY201 4.4 17.9 1.0 OD2 A:ASP199 4.6 19.9 1.0 CG A:ASP199 4.6 18.5 1.0 O3B A:ADP486 4.6 15.6 0.9 CG2 A:THR204 4.7 21.1 1.0 O A:HOH509 4.7 23.7 0.8 OD2 A:ASP206 4.8 23.6 1.0 O3A A:ADP486 4.8 14.7 0.9 O A:HOH562 4.9 26.0 0.9 C A:LEU200 4.9 17.8 1.0 O1A A:ADP486 5.0 15.1 0.9 N A:PHE205 5.0 21.8 1.0

Sodium binding site 2 out of 2 in the Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na491 b:19.1 occ:1.00 O2B A:ADP486 2.2 13.1 0.9 O A:HOH558 2.3 10.9 0.8 O A:TYR15 2.4 17.6 1.0 OD2 A:ASP10 2.5 22.4 1.0 O A:HOH563 2.7 22.1 1.0 O A:HOH562 3.1 26.0 0.9 CG A:ASP10 3.3 21.4 1.0 PB A:ADP486 3.4 13.6 0.9 C A:TYR15 3.5 18.1 1.0 MG A:MG487 3.5 11.0 0.8 OD1 A:ASP10 3.5 22.1 1.0 O3A A:ADP486 3.6 14.7 0.9 O3B A:ADP486 3.9 15.6 0.9 CA A:GLY12 3.9 19.4 1.0 O2A A:ADP486 4.0 13.7 0.9 PA A:ADP486 4.1 12.6 0.9 O1A A:ADP486 4.3 15.1 0.9 N A:GLY12 4.3 19.6 1.0 CB A:TYR15 4.3 18.9 1.0 CA A:TYR15 4.3 18.8 1.0 N A:SER16 4.3 17.4 1.0 CA A:SER16 4.5 18.4 1.0 N A:TYR15 4.6 19.3 1.0 O A:HOH503 4.6 10.8 1.0 CB A:ASP10 4.6 20.3 1.0 O A:ASP366 4.7 21.9 1.0 O1B A:ADP486 4.7 12.6 0.9 O A:HOH560 4.7 17.1 0.9 O2 A:PO4488 4.9 22.8 0.8 O A:HOH573 4.9 19.1 1.0 C A:SER16 4.9 19.5 1.0 O A:ASP10 4.9 19.1 1.0 O3 A:PO4488 4.9 23.0 0.8 O A:HOH561 5.0 8.2 0.6

K.M.Flaherty, C.Deluca-Flaherty, D.B.Mckay. Three-Dimensional Structure of the Atpase Fragment of A 70K Heat-Shock Cognate Protein. Nature V. 346 623 1990.
ISSN: ISSN 0028-0836
PubMed: 2143562
DOI: 10.1038/346623A0