Sodium in the structure of Three-Dimensional Structure Of the Atpase Fragment of A 70K Heat-Shock Cognate Protein (pdb 3hsc)

The binding sites of Sodium atom in the structure of Three-Dimensional Structure Of the Atpase Fragment of A 70K Heat-Shock Cognate Protein (pdb code 3hsc). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3hsc structure was solved by K.M.FLAHERTY, C.R.DELUCA-FLAHERTY, D.B.MCKAY, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 6.0-1.9 Space group P212121 a (A) 145.300 b (A) 65.000 c (A) 46.900 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 21 Rfree (%) n/a Sodium Binding Sites: Sodium binding site 1 out of 2 in 3hsc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3hsc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp199, A: Leu200, A: Gly201, A: Gly202, A: Thr204, A: Phe205, A: Asp206, A: Mg487, A: Po4488, A: Adp486, A: Hoh509, A: Hoh543, A: Hoh545, A: Hoh560, A: Hoh561, A: Hoh562, conact list: Atom Atom Distance (A) Na OD2 A:Asp199 4.56 Na OD1 A:Asp199 4.26 Na CG A:Asp199 4.61 Na C A:Leu200 4.90 Na N A:Gly201 3.73 Na C A:Gly201 4.43 Na CA A:Gly201 3.58 Na N A:Gly202 4.40 Na O A:Thr204 3.37 Na N A:Thr204 4.19 Na CB A:Thr204 3.58 Na CG2 A:Thr204 4.68 Na OG1 A:Thr204 2.29 Na C A:Thr204 3.95 Na CA A:Thr204 4.11 Na N A:Phe205 4.97 Na OD2 A:Asp206 4.78 Na MG A:Mg487 3.46 Na O1 A:Po4488 4.04 Na O2 A:Po4488 2.27 Na P A:Po4488 3.25 Na O4 A:Po4488 3.11 Na O3 A:Po4488 4.38 Na O3B A:Adp486 4.61 Na O1B A:Adp486 2.53 Na PB A:Adp486 3.71 Na O2B A:Adp486 4.02 Na O3A A:Adp486 4.80 Na O1A A:Adp486 4.96 Na O A:Hoh509 4.73 Na O A:Hoh543 2.29 Na O A:Hoh545 3.37 Na O A:Hoh560 2.60 Na O A:Hoh561 4.34 Na O A:Hoh562 4.86 interactive model: Sodium binding site 2 out of 2 in 3hsc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Sodium in the PDB 3hsc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp10, A: Gly12, A: Tyr15, A: Ser16, A: Asp366, A: Mg487, A: Po4488, A: Adp486, A: Hoh503, A: Hoh558, A: Hoh560, A: Hoh561, A: Hoh562, A: Hoh563, A: Hoh573, conact list: Atom Atom Distance (A) Na O A:Asp10 4.92 Na CB A:Asp10 4.60 Na OD2 A:Asp10 2.54 Na OD1 A:Asp10 3.54 Na CG A:Asp10 3.33 Na N A:Gly12 4.26 Na CA A:Gly12 3.90 Na O A:Tyr15 2.43 Na N A:Tyr15 4.56 Na CB A:Tyr15 4.30 Na C A:Tyr15 3.46 Na CA A:Tyr15 4.31 Na N A:Ser16 4.33 Na C A:Ser16 4.89 Na CA A:Ser16 4.45 Na O A:Asp366 4.67 Na MG A:Mg487 3.47 Na O2 A:Po4488 4.85 Na O3 A:Po4488 4.94 Na O3B A:Adp486 3.89 Na PA A:Adp486 4.12 Na O2A A:Adp486 3.99 Na O1B A:Adp486 4.71 Na PB A:Adp486 3.43 Na O2B A:Adp486 2.24 Na O3A A:Adp486 3.64 Na O1A A:Adp486 4.25 Na O A:Hoh503 4.58 Na O A:Hoh558 2.32 Na O A:Hoh560 4.72 Na O A:Hoh561 4.97 Na O A:Hoh562 3.09 Na O A:Hoh563 2.71 Na O A:Hoh573 4.89 interactive model: