Sodium in PDB 3hjb: 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.

All present enzymatic activity of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.:
5.3.1.9;

The structure of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae., PDB code: 3hjb was solved by G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.88 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	125.661, 75.094, 127.456, 90.00, 90.21, 90.00
R / Rfree (%)	12.7 / 15.1

The structure of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae. also contains other interesting chemical elements:

Chlorine	(Cl)	27 atoms
Calcium	(Ca)	10 atoms

The binding sites of Sodium atom in the 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae. (pdb code 3hjb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae., PDB code: 3hjb:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae. within 5.0Å range: probe atom residue distance (Å) B Occ B:Na560 b:20.9 occ:1.00 O B:HOH1465 2.4 15.3 1.0 O B:HOH3986 2.4 32.5 1.0 O B:HOH1875 2.4 29.8 1.0 O B:HOH720 2.5 14.2 1.0 O B:HOH2002 2.5 15.1 1.0 O B:HOH2745 4.1 17.0 0.5 O B:GLU93 4.3 6.3 1.0 OD2 B:ASP266 4.4 14.8 1.0 NE B:ARG95 4.5 9.1 1.0 NH2 B:ARG95 4.5 18.2 1.0 O B:HOH1188 4.6 16.9 1.0 O B:HOH2531 4.8 31.5 1.0 CZ B:ARG95 5.0 15.2 1.0

Sodium binding site 2 out of 2 in the 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae. within 5.0Å range: probe atom residue distance (Å) B Occ C:Na557 b:20.2 occ:1.00 O C:HOH3215 2.3 34.2 1.0 O C:HOH1214 2.4 16.4 1.0 O C:HOH3913 2.4 29.8 1.0 O C:HOH651 2.5 14.2 1.0 O C:HOH1811 2.6 15.7 1.0 O C:HOH3056 4.2 13.5 0.5 O C:GLU93 4.3 5.8 1.0 OD2 C:ASP266 4.4 20.3 1.0 NE C:ARG95 4.5 8.5 1.0 NH2 C:ARG95 4.5 15.7 1.0 O C:HOH1612 4.5 16.2 1.0 O C:HOH2407 4.7 30.9 1.0 CZ C:ARG95 5.0 12.5 1.0

G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae. To Be Published.