Atomistry » Sodium » PDB 3h0n-3hwd » 3hjb
Atomistry »
  Sodium »
    PDB 3h0n-3hwd »
      3hjb »

Sodium in PDB 3hjb: 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.

Enzymatic activity of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.

All present enzymatic activity of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.:
5.3.1.9;

Protein crystallography data

The structure of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae., PDB code: 3hjb was solved by G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.88 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 125.661, 75.094, 127.456, 90.00, 90.21, 90.00
R / Rfree (%) 12.7 / 15.1

Other elements in 3hjb:

The structure of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae. also contains other interesting chemical elements:

Chlorine (Cl) 27 atoms
Calcium (Ca) 10 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae. (pdb code 3hjb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae., PDB code: 3hjb:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 3hjb

Go back to Sodium Binding Sites List in 3hjb
Sodium binding site 1 out of 2 in the 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na560

b:20.9
occ:1.00
O B:HOH1465 2.4 15.3 1.0
O B:HOH3986 2.4 32.5 1.0
O B:HOH1875 2.4 29.8 1.0
O B:HOH720 2.5 14.2 1.0
O B:HOH2002 2.5 15.1 1.0
O B:HOH2745 4.1 17.0 0.5
O B:GLU93 4.3 6.3 1.0
OD2 B:ASP266 4.4 14.8 1.0
NE B:ARG95 4.5 9.1 1.0
NH2 B:ARG95 4.5 18.2 1.0
O B:HOH1188 4.6 16.9 1.0
O B:HOH2531 4.8 31.5 1.0
CZ B:ARG95 5.0 15.2 1.0

Sodium binding site 2 out of 2 in 3hjb

Go back to Sodium Binding Sites List in 3hjb
Sodium binding site 2 out of 2 in the 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na557

b:20.2
occ:1.00
O C:HOH3215 2.3 34.2 1.0
O C:HOH1214 2.4 16.4 1.0
O C:HOH3913 2.4 29.8 1.0
O C:HOH651 2.5 14.2 1.0
O C:HOH1811 2.6 15.7 1.0
O C:HOH3056 4.2 13.5 0.5
O C:GLU93 4.3 5.8 1.0
OD2 C:ASP266 4.4 20.3 1.0
NE C:ARG95 4.5 8.5 1.0
NH2 C:ARG95 4.5 15.7 1.0
O C:HOH1612 4.5 16.2 1.0
O C:HOH2407 4.7 30.9 1.0
CZ C:ARG95 5.0 12.5 1.0

Reference:

G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.5 Angstrom Crystal Structure of Glucose-6-Phosphate Isomerase From Vibrio Cholerae. To Be Published.
Page generated: Tue Dec 15 06:13:22 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy