Sodium in PDB 3hiu: The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913

The structure of The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913, PDB code: 3hiu was solved by K.Tan, X.Xu, H.Cui, A.Savchenko, A.Edwards, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.72 / 1.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	102.592, 56.843, 53.990, 90.00, 90.01, 90.00
R / Rfree (%)	20.7 / 25.7

The binding sites of Sodium atom in the The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 (pdb code 3hiu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913, PDB code: 3hiu:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1 b:58.0 occ:1.00 OG1 A:THR52 2.7 43.9 1.0 OE1 A:GLU110 2.8 43.5 1.0 OE1 A:GLN55 2.8 44.5 1.0 OE1 A:GLU21 2.8 46.9 1.0 OE2 A:GLU110 2.9 52.6 1.0 OE2 A:GLU140 3.0 48.5 1.0 CD A:GLU110 3.2 43.4 1.0 NE2 A:HIS48 3.6 38.4 1.0 CD A:GLU21 3.6 44.5 1.0 OE1 A:GLU140 3.7 41.9 1.0 CD A:GLU140 3.7 39.8 1.0 OE2 A:GLU21 3.7 44.9 1.0 CD A:GLN55 3.7 43.8 1.0 OE2 A:GLU107 4.0 47.3 1.0 NE2 A:GLN55 4.0 40.6 1.0 CB A:THR52 4.1 41.6 1.0 CB A:ALA24 4.1 40.2 1.0 CE1 A:HIS48 4.2 42.0 1.0 CD2 A:HIS48 4.3 37.1 1.0 OE1 A:GLU107 4.5 46.4 1.0 CA A:THR52 4.6 42.3 1.0 CG A:GLU110 4.7 37.6 1.0 CD A:GLU107 4.7 45.0 1.0 CG2 A:THR52 4.7 36.0 1.0 CE A:MSE28 4.8 21.6 0.5

Sodium binding site 2 out of 4 in the The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na2 b:40.7 occ:1.00 OG1 B:THR52 2.6 41.8 1.0 OE1 B:GLN55 2.8 40.5 1.0 OE1 B:GLU21 3.0 38.8 1.0 NE2 B:HIS48 3.1 49.1 1.0 OE1 B:GLU110 3.2 40.3 1.0 OE2 B:GLU110 3.2 55.0 1.0 OE2 B:GLU140 3.4 38.4 1.0 OE1 B:GLU140 3.4 45.8 1.0 CE1 B:HIS48 3.5 47.4 1.0 CD B:GLN55 3.6 39.3 1.0 CD B:GLU110 3.6 41.5 1.0 CD B:GLU140 3.8 37.5 1.0 NE2 B:GLN55 3.8 40.8 1.0 CB B:THR52 3.8 33.5 1.0 CD2 B:HIS48 4.0 45.7 1.0 CD B:GLU21 4.0 37.7 1.0 OE2 B:GLU21 4.2 37.5 1.0 CA B:THR52 4.2 29.8 1.0 CG2 B:THR52 4.3 30.4 1.0 CB B:ALA24 4.3 27.5 1.0 ND1 B:HIS48 4.5 43.0 1.0 CE B:MSE28 4.6 29.1 1.0 OE1 B:GLU107 4.6 41.0 1.0 OE2 B:GLU107 4.7 44.4 1.0 CG B:HIS48 4.7 44.7 1.0 N B:THR52 4.8 32.6 1.0 SE B:MSE28 5.0 95.5 0.5

Sodium binding site 3 out of 4 in the The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na3 b:42.3 occ:1.00 OE1 C:GLU110 2.4 49.3 1.0 OE1 C:GLN55 2.6 39.4 1.0 OE1 C:GLU21 2.7 76.0 1.0 OE2 C:GLU21 2.8 74.1 1.0 OE2 C:GLU140 2.9 39.3 1.0 O C:HOH208 2.9 51.3 1.0 CD C:GLU140 2.9 36.3 1.0 CD C:GLU21 3.1 71.1 1.0 CG C:GLU140 3.2 42.9 1.0 CD C:GLN55 3.4 40.2 1.0 OE1 C:GLU140 3.5 20.5 1.0 CD C:GLU110 3.5 46.3 1.0 NE2 C:GLN55 3.7 35.5 1.0 OE2 C:GLU110 3.9 52.8 1.0 CG2 C:ILE136 4.0 26.7 1.0 CE2 C:TYR114 4.1 39.3 1.0 OH C:TYR114 4.4 34.4 1.0 CG C:GLU21 4.6 61.9 1.0 CG C:GLN55 4.6 43.1 1.0 CG2 C:THR52 4.6 35.8 1.0 CB C:GLN55 4.7 45.4 1.0 CZ C:TYR114 4.7 38.5 1.0 OG1 C:THR52 4.7 31.1 1.0 CG C:GLU110 4.7 31.9 1.0 CB C:GLU140 4.8 40.0 1.0 CB C:GLU110 4.8 30.9 1.0

Sodium binding site 4 out of 4 in the The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range: probe atom residue distance (Å) B Occ D:Na170 b:41.1 occ:1.00 OE1 D:GLN55 2.5 40.0 1.0 OE1 D:GLU110 2.5 52.4 1.0 OE1 D:GLU21 2.6 61.5 1.0 OE2 D:GLU21 2.8 60.9 1.0 OE2 D:GLU140 2.8 44.4 1.0 CD D:GLU140 3.0 38.4 1.0 CD D:GLU21 3.1 58.2 1.0 O D:HOH215 3.2 41.8 1.0 CD D:GLN55 3.2 38.1 1.0 CG D:GLU140 3.4 32.1 1.0 OE1 D:GLU140 3.5 27.8 1.0 CD D:GLU110 3.5 46.9 1.0 NE2 D:GLN55 3.6 35.9 1.0 OE2 D:GLU110 3.9 43.0 1.0 CG2 D:ILE136 4.0 29.7 1.0 OG1 D:THR52 4.1 36.9 1.0 CE2 D:TYR114 4.3 35.1 1.0 CG2 D:THR52 4.3 32.5 1.0 OH D:TYR114 4.4 33.5 1.0 CG D:GLN55 4.5 37.2 1.0 CG D:GLU21 4.6 52.0 1.0 CB D:GLN55 4.6 36.6 1.0 CB D:THR52 4.7 35.4 1.0 CZ D:TYR114 4.8 35.1 1.0 CG D:GLU110 4.9 36.6 1.0 CB D:GLU140 4.9 30.3 1.0

K.Tan, X.Xu, H.Cui, A.Savchenko, A.Edwards, A.Joachimiak. The Crystal Structure of Protein (XCC3681) From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 To Be Published.