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Sodium in PDB 3h7k: Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate
Enzymatic activity of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate
All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate:
3.5.3.12;
3.5.3.12;
Protein crystallography data
The structure of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate, PDB code: 3h7k
was solved by
E.S.Burgie,
C.A.Bingman,
G.N.Phillips Jr.,
Center For Eukaryoticstructural Genomics (Cesg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 40.20 / 1.84 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 123.720, 69.560, 50.986, 90.00, 98.52, 90.00 |
| R / Rfree (%) | 14.7 / 18.5 |
Other elements in 3h7k:
The structure of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate also contains other interesting chemical elements:
| Magnesium | (Mg) | 1 atom |
| Chlorine | (Cl) | 3 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate
(pdb code 3h7k). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate, PDB code: 3h7k:
Jump to Sodium binding site number: 1; 2; 3;
In total 3 binding sites of Sodium where determined in the Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate, PDB code: 3h7k:
Jump to Sodium binding site number: 1; 2; 3;
Sodium binding site 1 out of 3 in 3h7k
Go back to
Sodium Binding Sites List in 3h7k
Sodium binding site 1 out
of 3 in the Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate within 5.0Å range:
|
Sodium binding site 2 out of 3 in 3h7k
Go back to
Sodium Binding Sites List in 3h7k
Sodium binding site 2 out
of 3 in the Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate within 5.0Å range:
|
Sodium binding site 3 out of 3 in 3h7k
Go back to
Sodium Binding Sites List in 3h7k
Sodium binding site 3 out
of 3 in the Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase Complexed with A Covalently Bound Reaction Intermediate within 5.0Å range:
|
Reference:
E.S.Burgie,
C.A.Bingman,
G.N.Phillips Jr..
Structural Insights Into the Catalytic Mechanism of Arabidopsis Thaliana Agmatine Deiminase To Be Published.
Page generated: Mon Oct 7 10:22:18 2024
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