Sodium in PDB 3g3r: Crystal Structure of A Eukaryotic Polyphosphate Polymerase in Complex with Appnhp-MN2+

The structure of Crystal Structure of A Eukaryotic Polyphosphate Polymerase in Complex with Appnhp-MN2+, PDB code: 3g3r was solved by M.Hothorn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.91 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	68.260, 100.970, 102.370, 90.00, 90.00, 90.00
R / Rfree (%)	21.2 / 25.3

The structure of Crystal Structure of A Eukaryotic Polyphosphate Polymerase in Complex with Appnhp-MN2+ also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of A Eukaryotic Polyphosphate Polymerase in Complex with Appnhp-MN2+ (pdb code 3g3r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Eukaryotic Polyphosphate Polymerase in Complex with Appnhp-MN2+, PDB code: 3g3r:

Sodium binding site 1 out of 1 in the Crystal Structure of A Eukaryotic Polyphosphate Polymerase in Complex with Appnhp-MN2+


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Eukaryotic Polyphosphate Polymerase in Complex with Appnhp-MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1 b:43.9 occ:1.00 OD1 A:ASP274 2.7 54.8 1.0 N A:ARG302 3.1 32.2 1.0 CG A:ASP274 3.4 52.2 1.0 CG A:ARG302 3.4 37.6 1.0 CB A:ARG302 3.4 37.2 1.0 OD2 A:ASP274 3.5 50.5 1.0 N A:GLU301 3.6 26.7 1.0 CD A:ARG302 3.6 43.2 1.0 CA A:ARG302 3.8 35.3 1.0 CB A:GLU301 3.9 29.4 1.0 C A:GLU301 4.0 33.8 1.0 CA A:GLU301 4.0 28.4 1.0 CB A:LYS300 4.1 35.7 1.0 C A:LYS300 4.2 29.8 1.0 NE A:ARG302 4.3 48.1 1.0 OE1 A:GLU301 4.5 34.4 1.0 CA A:LYS300 4.6 32.2 1.0 O A:ASP274 4.7 31.6 1.0 NZ B:LYS326 4.8 66.8 1.0 CB A:ASP274 4.8 50.2 1.0 O A:LYS300 4.9 28.2 1.0 CG A:LYS300 4.9 36.4 1.0

M.Hothorn, H.Neumann, E.D.Lenherr, M.Wehner, V.Rybin, P.O.Hassa, A.Uttenweiler, M.Reinhardt, A.Schmidt, J.Seiler, A.G.Ladurner, C.Herrmann, K.Scheffzek, A.Mayer. Catalytic Core of A Membrane-Associated Eukaryotic Polyphosphate Polymerase. Science V. 324 513 2009.
ISSN: ISSN 0036-8075
PubMed: 19390046
DOI: 10.1126/SCIENCE.1168120