Sodium in the structure of Crystal Structure of SSP1007 From Staphylococcus Saprophyticus Subsp. Saprophyticus. Northeast Structural Genomics Target SYR101A. (pdb 3foj)

The binding sites of Sodium atom in the structure of Crystal Structure of SSP1007 From Staphylococcus Saprophyticus Subsp. Saprophyticus. Northeast Structural Genomics Target SYR101A. (pdb code 3foj). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3foj structure was solved by J.SEETHARAMAN, M.ABASHIDZE, H.WANG, H.JANJUA, E.L.FOOTE, R.XIAO, J.K.EVERETT, T.B.ACTON, B.ROST, G.T.MONTELIONE, J.F.HUNT, L.TONG, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 27.2-1.6 Space group P212121 a (A) 30.692 b (A) 42.130 c (A) 58.855 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.4 Rfree (%) 23.5 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3foj Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3foj. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Thr40, A: Ile41, A: Hoh143, A: Hoh146, conact list: Atom Atom Distance (A) Na O A:Thr40 2.46 Na N A:Thr40 4.09 Na CB A:Thr40 3.74 Na OG1 A:Thr40 2.65 Na C A:Thr40 3.51 Na CA A:Thr40 3.97 Na N A:Ile41 4.67 Na O A:Hoh143 2.69 Na O A:Hoh146 2.88 interactive model: