Sodium in PDB 3fog: Crystal Structure of the Px Domain of Sorting Nexin-17 (SNX17)

The structure of Crystal Structure of the Px Domain of Sorting Nexin-17 (SNX17), PDB code: 3fog was solved by M.Wisniewska, L.Tresaugues, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Collins, L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, A.Johansson, I.Johansson, T.Karlberg, T.Kotenyova, L.Lehtio, M.Moche, M.E.Nilsson, P.Nordlund, T.Nyman, C.Persson, J.Sagemark, M.I.Siponen, A.G.Thorsell, S.Van Den Berg, J.Weigelt, M.Welin, M.Wikstrom, H.Schueler, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.42 / 2.80
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	89.890, 89.890, 39.260, 90.00, 90.00, 120.00
R / Rfree (%)	23 / 27.9

The binding sites of Sodium atom in the Crystal Structure of the Px Domain of Sorting Nexin-17 (SNX17) (pdb code 3fog). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Px Domain of Sorting Nexin-17 (SNX17), PDB code: 3fog:

Sodium binding site 1 out of 1 in the Crystal Structure of the Px Domain of Sorting Nexin-17 (SNX17)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Px Domain of Sorting Nexin-17 (SNX17) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na123 b:61.0 occ:1.00 NH2 A:ARG36 3.4 76.4 1.0 N A:SER38 3.5 50.9 1.0 NE A:ARG36 3.5 80.3 1.0 OG A:SER38 3.6 61.4 1.0 CB A:SER38 3.8 55.2 1.0 CZ A:ARG36 3.9 83.1 1.0 N A:TYR37 3.9 54.6 1.0 CB A:ARG36 4.1 60.9 1.0 CB A:TYR37 4.2 52.1 1.0 CA A:SER38 4.3 51.3 1.0 CA A:TYR37 4.3 52.9 1.0 C A:TYR37 4.4 52.2 1.0 C A:ARG36 4.6 59.1 1.0 CG A:ARG36 4.7 66.6 1.0 CD A:ARG36 4.7 73.7 1.0 CA A:ARG36 4.9 62.1 1.0 CD2 A:TYR37 4.9 50.0 1.0 CB A:TYR20 4.9 78.3 1.0

M.Wisniewska, L.Tresaugues, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Collins, L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, A.Johansson, I.Johansson, T.Karlberg, T.Kotenyova, L.Lehtio, M.Moche, M.E.Nilsson, P.Nordlund, T.Nyman, C.Persson, J.Sagemark, M.I.Siponen, A.G.Thorsell, S.Van Den Berg, J.Weigelt, M.Welin, M.Wikstrom, H.Schueler. Crystal Structure of the Px Domain of Sorting Nexin-17 (SNX17) To Be Published.