Sodium in PDB 3fdj: The Structure of A Degv Family Protein From Eubacterium Eligens.

The structure of The Structure of A Degv Family Protein From Eubacterium Eligens., PDB code: 3fdj was solved by M.E.Cuff, R.Hendricks, L.Freeman, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.91 / 1.80
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	57.445, 57.445, 186.558, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 19.1

The binding sites of Sodium atom in the The Structure of A Degv Family Protein From Eubacterium Eligens. (pdb code 3fdj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of A Degv Family Protein From Eubacterium Eligens., PDB code: 3fdj:

Sodium binding site 1 out of 1 in the The Structure of A Degv Family Protein From Eubacterium Eligens.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of A Degv Family Protein From Eubacterium Eligens. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na279 b:23.7 occ:1.00 O A:HOH307 2.1 23.9 1.0 O A:HOH311 2.3 24.8 1.0 O A:ILE181 2.4 10.1 1.0 O A:ALA176 2.4 17.3 1.0 O A:LYS157 2.6 9.1 1.0 O A:VAL178 3.0 13.7 1.0 O A:HOH315 3.2 24.1 1.0 C A:ALA176 3.4 16.0 1.0 C A:ILE181 3.5 10.9 1.0 C A:LYS157 3.6 9.5 1.0 CA A:ALA176 3.7 15.3 1.0 N A:ILE181 3.8 11.2 1.0 CB A:ALA176 4.0 14.7 1.0 CA A:LYS157 4.1 9.0 1.0 C A:VAL178 4.1 14.7 1.0 CA A:ILE181 4.1 10.4 1.0 O A:HOH422 4.2 25.3 1.0 N A:GLY180 4.2 13.3 1.0 O A:HOH514 4.3 36.1 1.0 O A:HOH568 4.3 40.3 1.0 CB A:LYS157 4.4 9.6 1.0 N A:GLU177 4.5 17.0 1.0 CB A:ILE181 4.6 10.8 1.0 N A:SER182 4.6 9.9 1.0 N A:VAL178 4.6 15.5 1.0 O A:HOH285 4.6 38.3 1.0 CA A:LEU179 4.7 15.4 1.0 C A:GLY180 4.7 12.4 1.0 C A:GLU177 4.8 17.2 1.0 N A:SER158 4.8 9.4 1.0 N A:LEU179 4.8 15.2 1.0 C A:LEU179 4.8 14.2 1.0 CA A:SER182 4.9 11.0 1.0 CA A:GLY180 5.0 13.2 1.0 CA A:GLU177 5.0 17.5 1.0

M.E.Cuff, R.Hendricks, L.Freeman, A.Joachimiak. The Structure of A Degv Family Protein From Eubacterium Eligens. To Be Published.