Sodium in PDB 3fdb: Crystal Structure of A Putative Plp-Dependent Beta-Cystathionase (Aecd, DIP1736) From Corynebacterium Diphtheriae at 1.99 A Resolution

The structure of Crystal Structure of A Putative Plp-Dependent Beta-Cystathionase (Aecd, DIP1736) From Corynebacterium Diphtheriae at 1.99 A Resolution, PDB code: 3fdb was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.96 / 1.99
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	69.180, 69.180, 215.460, 90.00, 90.00, 120.00
R / Rfree (%)	14.7 / 17.5

The structure of Crystal Structure of A Putative Plp-Dependent Beta-Cystathionase (Aecd, DIP1736) From Corynebacterium Diphtheriae at 1.99 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Sodium atom in the Crystal Structure of A Putative Plp-Dependent Beta-Cystathionase (Aecd, DIP1736) From Corynebacterium Diphtheriae at 1.99 A Resolution (pdb code 3fdb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Putative Plp-Dependent Beta-Cystathionase (Aecd, DIP1736) From Corynebacterium Diphtheriae at 1.99 A Resolution, PDB code: 3fdb:

Sodium binding site 1 out of 1 in the Crystal Structure of A Putative Plp-Dependent Beta-Cystathionase (Aecd, DIP1736) From Corynebacterium Diphtheriae at 1.99 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative Plp-Dependent Beta-Cystathionase (Aecd, DIP1736) From Corynebacterium Diphtheriae at 1.99 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na377 b:40.7 occ:1.00 OP2 A:LLP222 2.2 98.7 1.0 O A:HOH640 3.1 52.0 1.0 OG A:SER221 3.2 48.1 1.0 N A:VAL89 3.4 39.9 1.0 P A:LLP222 3.6 99.1 1.0 CB A:ALA219 3.7 37.8 1.0 CB A:ASP88 3.7 41.5 1.0 CA A:ASP88 3.7 40.3 1.0 CG2 A:VAL89 3.8 36.8 1.0 CD1 A:ILE190 3.9 40.4 1.0 CB A:SER221 4.0 42.2 1.0 OP1 A:LLP222 4.0 93.6 1.0 C5' A:LLP222 4.0 56.6 1.0 C A:ASP88 4.1 39.1 1.0 CB A:ALA232 4.1 36.8 1.0 O A:HOH528 4.1 42.3 1.0 CB A:VAL89 4.2 42.4 1.0 O A:HOH627 4.2 51.5 1.0 OP4 A:LLP222 4.3 95.5 1.0 CA A:VAL89 4.4 40.8 1.0 O A:HOH678 4.5 55.3 1.0 OP3 A:LLP222 4.7 0.5 1.0 O A:CYS231 4.8 42.5 1.0 O A:PRO87 4.9 38.5 1.0 N A:ASP88 5.0 39.5 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.