Sodium in the structure of Crystal Structure of the Lysosomal 66.3 Kda Protein From Mouse Solved By S-Sad (pdb 3fbx)

The binding sites of Sodium atom in the structure of Crystal Structure of the Lysosomal 66.3 Kda Protein From Mouse Solved By S-Sad (pdb code 3fbx). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3fbx structure was solved by K.LAKOMEK, A.DICKMANNS, U.MUELLER, R.FICNER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 32.1-2.4 Space group C121 a (A) 148.804 b (A) 89.672 c (A) 64.954 alpha (°) 90.00 beta (°) 98.67 gamma (°) 90.00 Rfactor (%) 15.6 Rfree (%) 19.8 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3fbx Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3fbx. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ocs249, A: Gly314, A: Asp315, A: Asp316, A: Glu328, A: Thr329, A: Thr330, A: Tyr379, A: Asn381, conact list: Atom Atom Distance (A) Na CB A:Ocs249 4.76 Na SG A:Ocs249 3.40 Na OD2 A:Ocs249 3.34 Na OD3 A:Ocs249 2.38 Na OD1 A:Ocs249 4.19 Na O A:Gly314 4.00 Na O A:Asp315 2.89 Na C A:Asp315 3.75 Na CA A:Asp315 4.78 Na N A:Asp316 4.27 Na OD1 A:Asp316 4.86 Na O A:Glu328 4.49 Na OE1 A:Glu328 2.80 Na OE2 A:Glu328 2.99 Na CD A:Glu328 3.27 Na C A:Glu328 5.00 Na CG A:Glu328 4.76 Na C A:Thr329 4.70 Na CA A:Thr329 4.67 Na N A:Thr330 4.11 Na CB A:Thr330 4.21 Na OG1 A:Thr330 2.95 Na CA A:Thr330 4.71 Na CE2 A:Tyr379 3.96 Na CZ A:Tyr379 3.60 Na CE1 A:Tyr379 4.66 Na OH A:Tyr379 2.68 Na OD1 A:Asn381 4.73 interactive model: