Sodium in PDB 3f8v: Evaulaution at Atomic Resolution of the Role of Strain in Destabilizing the Temperature Sensitive T4 Lysozyme Mutant ARG96-- >His

Enzymatic activity of Evaulaution at Atomic Resolution of the Role of Strain in Destabilizing the Temperature Sensitive T4 Lysozyme Mutant ARG96-- >His

All present enzymatic activity of Evaulaution at Atomic Resolution of the Role of Strain in Destabilizing the Temperature Sensitive T4 Lysozyme Mutant ARG96-- >His:
3.2.1.17;

Protein crystallography data

The structure of Evaulaution at Atomic Resolution of the Role of Strain in Destabilizing the Temperature Sensitive T4 Lysozyme Mutant ARG96-- >His, PDB code: 3f8v was solved by B.H.M.Mooers, B.W.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	17.90 / 1.08
*Space group*	P 3₂ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	60.123, 60.123, 95.445, 90.00, 90.00, 120.00
*R / R_free (%)*	13.8 / 16.3

Other elements in 3f8v:

The structure of Evaulaution at Atomic Resolution of the Role of Strain in Destabilizing the Temperature Sensitive T4 Lysozyme Mutant ARG96-- >His also contains other interesting chemical elements:

Potassium	(K)	1 atom
Chlorine	(Cl)	2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Evaulaution at Atomic Resolution of the Role of Strain in Destabilizing the Temperature Sensitive T4 Lysozyme Mutant ARG96-- >His (pdb code 3f8v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Evaulaution at Atomic Resolution of the Role of Strain in Destabilizing the Temperature Sensitive T4 Lysozyme Mutant ARG96-- >His, PDB code: 3f8v:

Sodium binding site 1 out of 1 in 3f8v

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Sodium Binding Sites List in 3f8v

Sodium binding site 1 out of 1 in the Evaulaution at Atomic Resolution of the Role of Strain in Destabilizing the Temperature Sensitive T4 Lysozyme Mutant ARG96-- >His

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Evaulaution at Atomic Resolution of the Role of Strain in Destabilizing the Temperature Sensitive T4 Lysozyme Mutant ARG96-- >His within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na172 b:18.7 occ:0.80	O	A:HOH304	2.6	22.2	0.5
	O	A:HOH207	2.9	31.6	0.5
	O	A:GLU11	2.9	14.4	1.0
	O	A:HOH204	2.9	20.1	1.0
	OE1	A:GLU11	3.0	16.3	1.0
	OH	A:TYR18	3.0	23.9	1.0
	O	A:HOH304	3.4	19.9	0.5
	O	A:HOH388	3.5	37.7	1.0
	C	A:GLU11	3.8	12.5	1.0
	CA	A:GLU11	3.8	11.7	1.0
	CE2	A:TYR18	3.8	19.7	1.0
	CZ	A:TYR18	3.9	18.9	1.0
	CD	A:GLU11	4.1	13.9	1.0
	CB	A:GLU11	4.2	13.0	1.0
	O	A:HOH298	4.3	13.9	0.5
	CA	A:GLY30	4.4	11.4	1.0
	N	A:GLY30	4.7	10.4	1.0
	CG	A:GLU11	4.8	13.1	1.0
	O	A:HOH263	4.9	44.7	1.0
	O	A:ASP10	4.9	13.5	1.0

Reference:

B.H.Mooers, D.E.Tronrud, B.W.Matthews. Evaluation at Atomic Resolution of the Role of Strain in Destabilizing the Temperature-Sensitive T4 Lysozyme Mutant Arg 96 --> His. Protein Sci. V. 18 863 2009.
ISSN: ISSN 0961-8368
PubMed: 19384984
DOI: 10.1002/PRO.93

Page generated: Mon Oct 7 08:59:27 2024

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