Sodium in the structure of Crystal Structure of A DUF416 Family Protein (MAQU_0942) From Marinobacter Aquaeolei VT8 At 2.00 A Resolution (pdb 3f7c)

The binding sites of Sodium atom in the structure of Crystal Structure of A DUF416 Family Protein (MAQU_0942) From Marinobacter Aquaeolei VT8 At 2.00 A Resolution (pdb code 3f7c). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3f7c structure was solved by JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 29.4-2.0 Space group P64 a (A) 76.998 b (A) 76.998 c (A) 91.260 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 17.2 Rfree (%) 19.6 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3f7c Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3f7c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu18, A: Asn106, A: Asn109, A: Pro110, A: Asn111, A: Lys112, A: His113, A: Arg114, A: Hoh265, A: Hoh304, A: Hoh318, conact list: Atom Atom Distance (A) Na OE1 A:Glu18 2.31 Na OE2 A:Glu18 3.65 Na CD A:Glu18 3.27 Na CG A:Glu18 4.58 Na CB A:Asn106 4.83 Na ND2 A:Asn106 3.84 Na OD1 A:Asn106 2.41 Na CG A:Asn106 3.46 Na O A:Asn109 4.41 Na O A:Pro110 2.29 Na CB A:Pro110 4.87 Na C A:Pro110 3.22 Na CA A:Pro110 3.91 Na O A:Asn111 4.57 Na N A:Asn111 4.15 Na C A:Asn111 4.10 Na CA A:Asn111 4.42 Na O A:Lys112 2.22 Na N A:Lys112 3.90 Na CB A:Lys112 4.94 Na C A:Lys112 3.33 Na CA A:Lys112 4.24 Na N A:His113 4.17 Na C A:His113 4.77 Na CA A:His113 4.21 Na N A:Arg114 4.56 Na CD A:Arg114 4.57 Na CG A:Arg114 4.49 Na NE A:Arg114 4.33 Na O A:Hoh265 4.14 Na O A:Hoh304 2.70 Na O A:Hoh318 3.75 interactive model: