Sodium in PDB 3f4f: Crystal Structure of DUT1P, A Dutpase From Saccharomyces Cerevisiae

All present enzymatic activity of Crystal Structure of DUT1P, A Dutpase From Saccharomyces Cerevisiae:
3.6.1.23;

The structure of Crystal Structure of DUT1P, A Dutpase From Saccharomyces Cerevisiae, PDB code: 3f4f was solved by A.U.Singer, E.Evdokimova, M.Kudritska, A.M.Edwards, A.F.Yakunin, A.Savchenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.73 / 2.00
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	124.498, 124.498, 51.664, 90.00, 90.00, 90.00
R / Rfree (%)	14.6 / 20.7

The binding sites of Sodium atom in the Crystal Structure of DUT1P, A Dutpase From Saccharomyces Cerevisiae (pdb code 3f4f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of DUT1P, A Dutpase From Saccharomyces Cerevisiae, PDB code: 3f4f:

Sodium binding site 1 out of 1 in the Crystal Structure of DUT1P, A Dutpase From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of DUT1P, A Dutpase From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na148 b:48.6 occ:1.00 NH1 A:ARG137 3.6 26.4 1.0 O C:HOH263 3.6 32.0 1.0 O B:HOH156 3.7 39.5 1.0 CZ A:ARG137 3.9 27.8 1.0 O B:GLY24 3.9 22.2 1.0 NH2 A:ARG137 4.1 27.9 1.0 CG A:ARG137 4.3 23.9 1.0 CB B:SER25 4.4 19.7 1.0 CB A:ARG137 4.5 23.7 1.0 NE A:ARG137 4.5 26.1 1.0 OP3 C:UMP200 4.6 23.3 1.0 CA A:ARG137 4.6 24.2 1.0 O A:GLY140 4.8 24.2 1.0 C B:GLY24 4.9 21.3 1.0 CD A:ARG137 4.9 25.6 1.0

A.Tchigvintsev, A.U.Singer, R.Flick, P.Petit, G.Brown, E.Evdokimova, A.Savchenko, A.F.Yakunin. Structure and Activity of the Saccharomyces Cerevisiae Dutp Pyrophosphatase DUT1, An Essential Housekeeping Enzyme. Biochem.J. V. 437 243 2011.
ISSN: ISSN 0264-6021
PubMed: 21548881
DOI: 10.1042/BJ20110304