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Sodium in PDB 3exc: Structure of the Rna'Se SSO8090 From Sulfolobus Solfataricus

Protein crystallography data

The structure of Structure of the Rna'Se SSO8090 From Sulfolobus Solfataricus, PDB code: 3exc was solved by A.U.Singer, T.Skarina, K.Tan, O.Kagan, O.Onopriyenko, A.M.Edwards, A.Joachimiak, A.F.Yakunin, A.Savchenko, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.67 / 2.25
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.479, 93.479, 48.596, 90.00, 90.00, 120.00
R / Rfree (%) 19.1 / 22.1

Other elements in 3exc:

The structure of Structure of the Rna'Se SSO8090 From Sulfolobus Solfataricus also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of the Rna'Se SSO8090 From Sulfolobus Solfataricus (pdb code 3exc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Rna'Se SSO8090 From Sulfolobus Solfataricus, PDB code: 3exc:

Sodium binding site 1 out of 1 in 3exc

Go back to Sodium Binding Sites List in 3exc
Sodium binding site 1 out of 1 in the Structure of the Rna'Se SSO8090 From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Rna'Se SSO8090 From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Na90

b:47.0
occ:1.00
OE1 X:GLN31 2.6 30.8 1.0
O X:HOH135 2.8 59.2 0.5
N X:SER33 3.2 37.5 1.0
CD X:GLN31 3.7 33.7 1.0
CB X:SER33 3.8 36.5 1.0
CB X:GLN31 3.8 34.7 1.0
CA X:SER33 3.9 36.7 1.0
N X:ARG32 4.2 34.6 1.0
C X:ARG32 4.2 38.1 1.0
C X:SER33 4.2 34.4 1.0
CG X:GLN31 4.4 34.3 1.0
CB X:ARG32 4.4 37.4 1.0
CA X:ARG32 4.4 37.5 1.0
O X:SER33 4.5 35.1 1.0
OG X:SER33 4.6 39.6 1.0
CG X:ARG32 4.6 42.1 1.0
C X:GLN31 4.7 33.7 1.0
N X:ALA34 4.7 31.4 1.0
NE2 X:GLN31 4.8 31.6 1.0
O X:HOH106 4.8 38.3 1.0
CB X:ALA34 4.9 28.8 1.0

Reference:

M.Proudfoot, M.Brown, A.U.Singer, T.Skarina, K.Tan, O.Kagan, A.M.Edwards, A.Joachimiak, A.Savchenko, A.F.Yakunin. Structure of the Rna'Se SSO8090 From Sulfolobus Solfataricus To Be Published.
Page generated: Tue Dec 15 06:10:10 2020

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