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Sodium in PDB 3eqh: X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex with U0126, Adp and MG2P

Enzymatic activity of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex with U0126, Adp and MG2P

All present enzymatic activity of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex with U0126, Adp and MG2P:
2.7.12.2;

Protein crystallography data

The structure of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex with U0126, Adp and MG2P, PDB code: 3eqh was solved by T.O.Fischmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.00 / 2.00
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 76.610, 76.610, 222.900, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Other elements in 3eqh:

The structure of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex with U0126, Adp and MG2P also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex with U0126, Adp and MG2P (pdb code 3eqh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex with U0126, Adp and MG2P, PDB code: 3eqh:

Sodium binding site 1 out of 1 in 3eqh

Go back to Sodium Binding Sites List in 3eqh
Sodium binding site 1 out of 1 in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex with U0126, Adp and MG2P


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex with U0126, Adp and MG2P within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na6

b:38.6
occ:1.00
 O A:HOH527 2.3 48.6 1.0
OD2 A:ASP65 2.4 52.0 1.0
OD1 A:ASP65 2.5 53.0 1.0
CG A:ASP65 2.8 51.6 1.0
O A:HOH479 2.8 55.2 1.0
CA A:CA5 4.0 43.0 0.5
OD1 A:ASP136 4.3 79.1 1.0
CB A:ASP65 4.3 42.1 1.0
NH1 A:ARG96 4.5 34.8 1.0
NH2 A:ARG96 4.6 39.2 1.0
O A:ASP65 4.8 43.9 1.0
OG A:SER135 4.8 71.8 1.0
C A:ASP65 5.0 44.6 1.0

Reference:

T.O.Fischmann, C.K.Smith, T.W.Mayhood, J.E.Myers, P.Reichert, A.Mannarino, D.Carr, H.Zhu, J.Wong, R.S.Yang, H.V.Le, V.S.Madison. Crystal Structures of MEK1 Binary and Ternary Complexes with Nucleotides and Inhibitors. Biochemistry V. 48 2661 2009.
ISSN: ISSN 0006-2960
PubMed: 19161339
DOI: 10.1021/BI801898E
Page generated: Mon Oct 7 08:54:27 2024

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