Sodium in PDB 3e0y: The Crystal Structure of A Conserved Domain From A Protein of Geobacter Sulfurreducens Pca

The structure of The Crystal Structure of A Conserved Domain From A Protein of Geobacter Sulfurreducens Pca, PDB code: 3e0y was solved by K.Tan, L.Bigelow, S.Clancy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.30 / 3.10
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	59.421, 59.421, 223.175, 90.00, 90.00, 120.00
R / Rfree (%)	21.6 / 29.1

The binding sites of Sodium atom in the The Crystal Structure of A Conserved Domain From A Protein of Geobacter Sulfurreducens Pca (pdb code 3e0y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of A Conserved Domain From A Protein of Geobacter Sulfurreducens Pca, PDB code: 3e0y:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of A Conserved Domain From A Protein of Geobacter Sulfurreducens Pca


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of A Conserved Domain From A Protein of Geobacter Sulfurreducens Pca within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1 b:46.7 occ:1.00 OH A:TYR117 2.7 57.1 1.0 OD1 A:ASN115 3.1 62.2 1.0 OD1 A:ASN200 3.3 63.6 1.0 OD1 A:ASN202 3.4 78.8 1.0 CE2 A:TYR117 3.6 59.5 1.0 CZ A:TYR117 3.6 58.5 1.0 CB A:ASN200 3.7 63.8 1.0 CG A:ASN200 3.9 63.6 1.0 CG A:ASN115 4.1 62.4 1.0 CB A:ASN115 4.2 61.6 1.0 CG A:ASN202 4.3 77.3 1.0 CE A:MSE184 4.3 78.7 1.0 ND2 A:ASN202 4.4 78.6 1.0 CD2 A:TYR117 5.0 58.8 1.0 OG1 A:THR149 5.0 63.5 1.0 CE1 A:TYR117 5.0 57.9 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of A Conserved Domain From A Protein of Geobacter Sulfurreducens Pca


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of A Conserved Domain From A Protein of Geobacter Sulfurreducens Pca within 5.0Å range: probe atom residue distance (Å) B Occ B:Na2 b:49.6 occ:1.00 OH B:TYR117 2.6 54.8 1.0 OD1 B:ASN115 3.1 61.1 1.0 CZ B:TYR117 3.5 56.2 1.0 CE2 B:TYR117 3.6 57.6 1.0 OD1 B:ASN200 3.7 64.8 1.0 CG B:ASN115 3.9 61.1 1.0 CB B:ASN200 4.0 63.1 1.0 CB B:ASN115 4.0 60.0 1.0 CG B:ASN200 4.2 63.6 1.0 OD1 B:ASN202 4.5 76.8 1.0 ND2 B:ASN202 4.6 76.7 1.0 CZ B:PHE132 4.7 69.6 1.0 CE1 B:TYR117 4.8 56.3 1.0 CD2 B:TYR117 4.9 57.3 1.0 CG B:ASN202 5.0 75.8 1.0

K.Tan, L.Bigelow, S.Clancy, A.Joachimiak. The Crystal Structure of A Conserved Domain From A Protein of Geobacter Sulfurreducens Pca To Be Published.