Sodium in PDB 3dr3: Structure of IDP00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri

All present enzymatic activity of Structure of IDP00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri:
1.2.1.38;

The structure of Structure of IDP00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri, PDB code: 3dr3 was solved by A.U.Singer, T.Skarina, O.Onopriyenko, A.M.Edwards, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectiousdiseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.81 / 2.00
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	117.299, 117.299, 115.472, 90.00, 90.00, 120.00
R / Rfree (%)	16.6 / 21.6

The binding sites of Sodium atom in the Structure of IDP00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri (pdb code 3dr3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of IDP00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri, PDB code: 3dr3:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of IDP00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of IDP00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri within 5.0Å range: probe atom residue distance (Å) B Occ A:Na335 b:16.6 occ:1.00 O A:MET27 2.2 18.6 1.0 O A:HIS24 2.3 16.4 1.0 O A:HOH448 2.4 19.4 1.0 O A:ASN22 2.5 14.8 1.0 O A:VAL21 2.6 14.3 1.0 C A:ASN22 3.1 16.2 1.0 C A:HIS24 3.4 17.8 1.0 C A:MET27 3.5 18.3 1.0 N A:HIS24 3.5 17.2 1.0 C A:VAL21 3.7 15.0 1.0 CA A:ASN22 3.7 15.0 1.0 O A:HOH668 3.8 59.4 1.0 CA A:HIS24 3.9 17.8 1.0 C A:ARG23 3.9 18.1 1.0 N A:ARG23 4.0 16.6 1.0 O A:HOH720 4.1 44.0 1.0 N A:ASN22 4.2 15.1 1.0 CA A:ASN28 4.2 19.1 1.0 CB A:HIS24 4.2 17.9 1.0 CB A:ASN28 4.3 20.5 1.0 N A:MET27 4.3 17.2 1.0 N A:ASN28 4.3 18.1 1.0 CA A:MET27 4.4 17.8 1.0 CA A:ARG23 4.4 18.1 1.0 O A:ARG23 4.5 16.8 1.0 N A:PRO25 4.5 19.1 1.0 CE A:MET1 4.5 26.3 1.0 CB A:MET27 4.7 17.7 1.0 O A:HOH518 4.7 23.7 1.0 O A:HOH338 4.8 9.8 1.0 CA A:PRO25 4.9 20.0 1.0 CA A:VAL21 4.9 13.9 1.0

Sodium binding site 2 out of 2 in the Structure of IDP00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of IDP00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri within 5.0Å range: probe atom residue distance (Å) B Occ A:Na336 b:27.0 occ:1.00 O A:LYS267 2.3 21.6 1.0 O A:VAL270 2.4 17.4 1.0 O A:TYR264 2.5 22.2 1.0 O A:HOH426 2.6 25.9 1.0 C A:LYS267 3.5 21.1 1.0 C A:VAL270 3.6 16.7 1.0 C A:TYR264 3.6 21.5 1.0 O A:HOH614 3.8 38.1 1.0 N A:LYS267 3.9 22.0 1.0 O A:ALA265 4.1 23.9 1.0 C A:ALA265 4.2 22.7 1.0 CA A:LYS267 4.2 21.5 1.0 CB A:TYR264 4.3 20.1 1.0 CA A:ALA265 4.3 22.9 1.0 CA A:VAL270 4.3 17.1 1.0 N A:VAL270 4.4 17.7 1.0 N A:ALA265 4.4 21.9 1.0 N A:PRO268 4.5 20.2 1.0 CB A:VAL270 4.5 17.3 1.0 CA A:TYR264 4.5 20.7 1.0 CB A:LYS267 4.6 21.6 1.0 N A:ARG271 4.6 15.1 1.0 CA A:PRO268 4.6 19.6 1.0 O A:HOH587 4.7 40.8 1.0 CA A:ARG271 4.7 14.9 1.0 N A:HIS266 4.7 22.2 1.0 C A:PRO268 4.8 18.7 1.0 O A:HOH550 4.8 52.1 1.0 O A:PRO268 4.9 18.9 1.0 C A:HIS266 4.9 23.1 1.0 N A:LEU272 5.0 13.9 1.0

A.U.Singer, T.Skarina, O.Onopriyenko, A.M.Edwards, W.F.Anderson, A.Savchenko. Structure of IDP00107, A Potential N-Acetyl-Gamma-Glutamylphosphate Reductase From Shigella Flexneri To Be Published.