Sodium in PDB 3dm3: Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E

The structure of Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E, PDB code: 3dm3 was solved by J.Seetharaman, M.Su, M.Maglaqui, H.Janjua, C.Ciccosanti, R.Xiao, R.Nair, J.K.Everett, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.76 / 2.40
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	76.001, 76.001, 249.479, 90.00, 90.00, 120.00
R / Rfree (%)	22.5 / 27.4

The binding sites of Sodium atom in the Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E (pdb code 3dm3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E, PDB code: 3dm3:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E within 5.0Å range: probe atom residue distance (Å) B Occ A:Na900 b:17.4 occ:1.00 NH2 A:ARG55 3.2 16.4 1.0 NH1 A:ARG55 3.6 13.1 1.0 CZ A:ARG55 3.9 15.5 1.0 CD1 A:ILE46 4.3 8.7 1.0

Sodium binding site 2 out of 3 in the Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E within 5.0Å range: probe atom residue distance (Å) B Occ A:Na901 b:17.4 occ:1.00 N A:TYR84 3.1 13.9 1.0 N A:GLY86 3.2 16.1 1.0 O A:HOH903 3.3 18.9 1.0 C A:GLY82 3.5 14.5 1.0 CA A:GLY82 3.5 14.8 1.0 CA A:GLY86 3.6 14.3 1.0 CA A:TYR84 3.6 14.6 1.0 N A:TYR83 3.7 13.8 1.0 CB A:TYR84 3.7 14.3 1.0 C A:TYR84 3.7 16.2 1.0 N A:GLY85 3.8 18.6 1.0 O A:GLY82 3.9 14.2 1.0 C A:GLY86 3.9 15.6 1.0 O A:GLY86 4.1 16.4 1.0 C A:TYR83 4.2 14.9 1.0 O A:TYR84 4.3 15.7 1.0 N A:GLY82 4.3 15.2 1.0 C A:GLY85 4.3 17.2 1.0 CA A:TYR83 4.4 14.5 1.0 N A:LEU87 4.6 15.3 1.0 CA A:GLY85 4.7 18.9 1.0 CD2 A:TYR84 4.7 15.7 1.0 CG A:TYR84 4.7 16.1 1.0

Sodium binding site 3 out of 3 in the Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E within 5.0Å range: probe atom residue distance (Å) B Occ B:Na903 b:17.4 occ:1.00 NH1 B:ARG34 2.9 27.8 1.0 NH2 B:ARG34 3.4 25.5 1.0 CZ B:ARG34 3.5 27.9 1.0 CE1 B:PHE32 3.6 13.6 1.0 CZ3 B:TRP59 3.7 23.1 1.0 CZ B:PHE32 3.8 12.2 1.0 CH2 B:TRP59 4.1 23.6 1.0 CE3 B:TRP59 4.5 21.0 1.0 NE B:ARG34 4.6 30.3 1.0 CD1 B:PHE32 4.7 14.5 1.0 CG B:ARG34 5.0 28.8 1.0

J.Seetharaman, M.Su, M.Maglaqui, H.Janjua, C.Ciccosanti, R.Xiao, R.Nair, J.K.Everett, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt. Crystal Structure of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E To Be Published.